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(-) Description

Title :  SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: REDUCED ENZYME BOUND TO NADP
 
Authors :  R. Orru, H. M. Dudek, C. Martinoli, D. E. Torres Pazmino, A. Royant, M. W M. W. Fraaije, A. Mattevi
Date :  06 Jun 11  (Deposition) - 22 Jun 11  (Release) - 24 Aug 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.26
Chains :  Asym./Biol. Unit :  A
Keywords :  Oxidoreductase, Oxygenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Orru, H. M. Dudek, C. Martinoli, D. E. Torres Pazmino, A. Royant, M. Weik, M. W. Fraaije, A. Mattevi
Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen Activation And Intermediate Stabilization.
J. Biol. Chem. V. 286 29284 2011
PubMed-ID: 21697090  |  Reference-DOI: 10.1074/JBC.M111.255075

(-) Compounds

Molecule 1 - PHENYLACETONE MONOOXYGENASE
    Chains: A
    EC Number: 1.14.13.92
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: K-12
    Expression System Taxid: 83333
    Expression System Variant: TOP10
    Organism Scientific: THERMOBIFIDA FUSCA
    Organism Taxid: 2021
    Synonym: PAMO, BAEYER-VILLIGER MONOOXYGENASE, BVMO

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2NAP1Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:22 , GLY A:23 , GLY A:25 , PHE A:26 , SER A:27 , GLU A:46 , THR A:47 , GLY A:53 , VAL A:54 , TRP A:55 , TRP A:57 , ASN A:58 , CYS A:65 , ASP A:66 , ILE A:67 , TYR A:72 , THR A:117 , THR A:118 , VAL A:119 , ALA A:149 , SER A:150 , GLY A:151 , GLN A:152 , ILE A:399 , MET A:446 , ILE A:450 , NAP A:701 , HOH A:2006 , HOH A:2008 , HOH A:2020 , HOH A:2076 , HOH A:2078 , HOH A:2176BINDING SITE FOR RESIDUE FAD A 700
2AC2SOFTWARETYR A:60 , ARG A:64 , CYS A:65 , ASP A:66 , LEU A:153 , PRO A:159 , PHE A:161 , GLY A:193 , THR A:194 , GLY A:195 , SER A:196 , SER A:197 , GLN A:200 , ARG A:217 , THR A:218 , HIS A:220 , LYS A:336 , ARG A:337 , ALA A:386 , THR A:387 , GLY A:388 , PHE A:389 , TRP A:501 , FAD A:700 , HOH A:2030 , HOH A:2080 , HOH A:2091 , HOH A:2102 , HOH A:2103 , HOH A:2104 , HOH A:2159 , HOH A:2172 , HOH A:2173 , HOH A:2218 , HOH A:2219 , HOH A:2237 , HOH A:2238BINDING SITE FOR RESIDUE NAP A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2YLS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2YLS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2YLS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2YLS)

(-) Exons   (0, 0)

(no "Exon" information available for 2YLS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:532
 aligned with PAMO_THEFY | Q47PU3 from UniProtKB/Swiss-Prot  Length:542

    Alignment length:532
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540  
           PAMO_THEFY    11 RQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSEREYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIADETLYPMTASWYTGANVPGKPRVFMLYVGGFHRYRQICDEVAAKGYEGFVLT 542
               SCOP domains d2ylsa1 A:11-154,A:390-542 Phenylacetone monooxygenase                                                                                          d2ylsa2 A:155-389 Phenylacetone monooxygenase                                                                                                                                                                                              d2ylsa1 A:11-154,A:390-542 Phenylacetone monooxygenase                                                                                                    SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------Pyr_redox_3-2ylsA01 A:20-222                                                                                                                                                                               -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeee..hhhhhhhhhhhhhh...eeee.......hhhhhh..................hhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.ee....eeeeeee....eeeeee....eeeeeeeee..............hhhhh..eeee.hhh..........eeeee..hhhhhhhhhhhh....eeeeee.....eee......hhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhh.hhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhh...........eee.hhhhhh....eeeee.....eeeee..eeee...eee..eeee.......hhhhhh.eeehhhhhhhhhhh.................eee......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhh.hhhhh.....................hhhhhhhhhhhhhhh....eeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2yls A  11 RQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSEREYELDSLVLATGFDALTGALFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIADETLYPMTASWYTGANVPGKPRVFMLYVGGFHRYRQICDEVAAKGYEGFVLT 542
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2YLS)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (PAMO_THEFY | Q47PU3)
molecular function
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0033776    phenylacetone monooxygenase activity    Catalysis of the reaction: H(+) + NADPH + O(2) + phenylacetone = benzyl acetate + H(2)O + NADP(+).
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PAMO_THEFY | Q47PU3: 1w4x 2ylr 2ylt 2ylw 2ylx 2ylz 2ym1 2ym2 4c74 4c77 4d03 4d04 4ovi

(-) Related Entries Specified in the PDB File

1w4x PHENYLACETONE MONOOXYGENASE, A BAEYER-VILLIGER MONOOXYGENASE
2ylr SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: COMPLEX WITH NADP
2ylt SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: COMPLEX WITH NADP AND MES
2ylw SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: ARG337LYS MUTANT IN COMPLEX WITH MES
2ylx SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: ASP66ALA MUTANT IN COMPLEX WITH NADP AND MES
2ylz SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: MET446GLY MUTANT
2ym1 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: ARG337LYS MUTANT IN COMPLEX WITH NADP
2ym2 SNAPSHOTS OF ENZYMATIC BAEYER-VILLIGER CATALYSIS: OXYGEN ACTIVATION AND INTERMEDIATE STABILIZATION: ARG337LYS MUTANT REDUCED STATE WITH NADP