2Y7N - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   STRUCTURE OF N-TERMINAL DOMAIN OF CANDIDA ALBICANS ALS9-2 - APO FORM

Authors :   P. S. Salgado, E. Cota

Date :   31 Jan 11 (Deposition) - 05 Oct 11 (Release) - 05 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Cell Adhesion, Adhesin, Peptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. S. Salgado, R. Yan, J. D. Taylor, L. Burchell, R. Jones, L. L. Hoyer, S. J. Matthews, P. J. Simpson, E. Cota
Structural Basis For The Broad Specificity To Host- Cell Ligands By The Pathogenic Fungus Candida Albicans.
Proc. Natl. Acad. Sci. Usa V. 108 15775 2011
PubMed-ID: 21896717 | Reference-DOI: 10.1073/PNAS.1103496108

Molecule 1 - AGGLUTININ-LIKE ALS9 PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET32 XA/LIC
	Expression System Strain	:	K-12
	Expression System Taxid	:	83333
	Expression System Variant	:	ORIGAMI
	Expression System Vector Type	:	PLASMID
	Fragment	:	N-TERMINAL DOMAIN, RESIDUES 18-328
	Organism Scientific	:	CANDIDA ALBICANS
	Organism Taxid	:	5476
	Synonym	:	NT_ALS9-2

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 2Y7N)

(no "Site" information available for 2Y7N)

Asymmetric/Biological Unit

No.	Residues
1	A:56	-	A:133
2	A:79	-	A:95
3	A:188	-	A:280
4	A:209	-	A:238

Asymmetric/Biological Unit

No.	Residues
1	Pro A:29	-	Thr A:30
2	Asp A:303	-	Ser A:304

Asymmetric/Biological Unit (17, 17)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
01	UniProt	VAR_ALS9_CANAL_001 *	V	39	A	ALS9_CANAL	---	---	A	V	22	A
02	UniProt	VAR_ALS9_CANAL_002 *	T	49	N	ALS9_CANAL	---	---	A	N	32	N
03	UniProt	VAR_ALS9_CANAL_003 *	A	63	P	ALS9_CANAL	---	---	A	P	46	P
04	UniProt	VAR_ALS9_CANAL_004 *	M	71	L	ALS9_CANAL	---	---	A	L	54	L
05	UniProt	VAR_ALS9_CANAL_005 *	S	80	T	ALS9_CANAL	---	---	A	T	63	T
06	UniProt	VAR_ALS9_CANAL_006 *	T	146	A	ALS9_CANAL	---	---	A	A	129	A
07	UniProt	VAR_ALS9_CANAL_007 *	M	161	T	ALS9_CANAL	---	---	A	M	144	T
08	UniProt	VAR_ALS9_CANAL_008 *	A	196	L	ALS9_CANAL	---	---	A	L	179	L
09	UniProt	VAR_ALS9_CANAL_009 *	S	202	V	ALS9_CANAL	---	---	A	V	185	V
10	UniProt	VAR_ALS9_CANAL_010 *	T	218	A	ALS9_CANAL	---	---	A	A	201	A
11	UniProt	VAR_ALS9_CANAL_011 *	Q	220	N	ALS9_CANAL	---	---	A	N	203	N
12	UniProt	VAR_ALS9_CANAL_012 *	I	229	V	ALS9_CANAL	---	---	A	V	212	V
13	UniProt	VAR_ALS9_CANAL_013 *	T	250	S	ALS9_CANAL	---	---	A	S	233	S
14	UniProt	VAR_ALS9_CANAL_014 *	K	298	E	ALS9_CANAL	---	---	A	E	281	E
15	UniProt	VAR_ALS9_CANAL_015 *	W	312	T	ALS9_CANAL	---	---	A	W	295	T
16	UniProt	VAR_ALS9_CANAL_016 *	N	322	D	ALS9_CANAL	---	---	A	D	305	D
17	UniProt	VAR_ALS9_CANAL_017 *	I	325	V	ALS9_CANAL	---	---	A	V	308	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2Y7N)

(no "Exon" information available for 2Y7N)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:311
 aligned with ALS9_CANAL | A0A1D8PQ86 from UniProtKB/Swiss-Prot  Length:1890

    Alignment length:311
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327 
           ALS9_CANAL    18 KTITGVFNSFDSLTWTRSVEYVYKGPETPTWTAVLGWSLNSTTADAGDTFTLIMPCVFKFITSQTSVDLTADGVSYATCDFNAGEEFTTFSSLSCTVNSVSVSYDKASGTVKLPITFNVGGTGSSVDLTDSKCFTAGKNTVTFMDGDTKISTTVDFDASPVSPSGYITSSRIIPSLNKASSLFVSPQCENGYTSGIMGFVTSQGATIDCSNINIGISKGLNDWNFPVSSESFTYTKTCSSSGIIVEYENVPAGYRPFVDAYISSENVEQYTLTYANEYTCKNGNTVVDPFTLTWWGYKNSEADSNGDIIVV 328
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeee...............eeeeeeeeee........eeeeeee.eeee.....eeeeee..eeeeeeeee.......eeeeeeee........eeeeeeeeeeee......hhhhhhhh.....eeeeeeeee..eeeeeeeee..........eeeeeeehhhheeeeeee.......eeeeeeeeeee..eeeeeeeeeeeee...............eeeeee...eeeeeeeee....eeeeeeeeee....eeeeee..eeee.....ee..eeeeee................ Sec.struct. author
                 SAPs(SNPs) ---------------------A---------N-------------P-------L--------T-----------------------------------------------------------------A--------------T----------------------------------L-----V---------------A-N--------V--------------------S-----------------------------------------------E-------------T---------D--V--- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y7n A   1 KTITGVFNSFDSLTWTRSVEYVYKGPETPTWNAVLGWSLNSTTADPGDTFTLILPCVFKFITTQTSVDLTADGVSYATCDFNAGEEFTTFSSLSCTVNSVSVSYARVSGTVKLPITFNVGGTGSSVDLADSKCFTAGKNTVTFMDGDTKISTTVDFDASPVSPSGYITSSRIIPSLNKLSSLFVVPQCENGYTSGIMGFVASNGATIDCSNVNIGISKGLNDWNFPVSSESFSYTKTCTSTSITVEFQNVPAGYRPFVDAYISAENIDKYTLTYANEYTCENGNTVVDPFTLTWWGYKNSEADSDGDVIVV 311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2Y7N)

(no "CATH Domain" information available for 2Y7N)

(no "Pfam Domain" information available for 2Y7N)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ALS9_CANAL | A0A1D8PQ86)

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2y7n)

	Sites
(no "Sites" information available for 2y7n)

	Cis Peptide Bonds
		Asp A:303 - Ser A:304	[ RasMol ]
		Pro A:29 - Thr A:30	[ RasMol ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	2y7n
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	ALS9_CANAL \| A0A1D8PQ86
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	ALS9_CANAL \| A0A1D8PQ86
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	ALS9_CANAL \| A0A1D8PQ86	:	2y7l 2y7m 2y7o 2ylh

2y7l	STRUCTURE OF N-TERMINAL DOMAIN OF CANDIDA ALBICANS ALS9-2 IN COMPLEX WITH HUMAN FIBRINOGEN GAMMA PEPTIDE
2y7m	STRUCTURE OF N-TERMINAL DOMAIN OF CANDIDA ALBICANS ALS9-2 (PT DERIVATIVE)
2y7o	STRUCTURE OF N-TERMINAL DOMAIN OF CANDIDA ALBICANS ALS9-2 - G299W MUTANT

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (4, 4)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (17, 17)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (1, 2)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File