2Y4S - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   BARLEY LIMIT DEXTRINASE IN COMPLEX WITH BETA-CYCLODEXTRIN

Authors :   M. B. Vester-Christensen, M. A. Hachem, B. Svensson, A. Henriksen

Date :   10 Jan 11 (Deposition) - 19 Jan 11 (Release) - 21 Nov 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym./Biol. Unit : A

Keywords :   Starch, Pullulanase, Hydrolase, Debranching Enzyme, Glycoside Hydrolase Family 13 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. B. Vester-Christensen, M. Abou Hachem, B. Svensson, A. Henriksen
Crystal Structure Of An Essential Enzyme In Seed Starch Degradation: Barley Limit Dextrinase In Complex With Cyclodextrins.
J. Mol. Biol. V. 403 739 2010
PubMed-ID: 20863834 | Reference-DOI: 10.1016/J.JMB.2010.09.031
(for further references see the PDB file header)

Molecule 1 - LIMIT DEXTRINASE
	Chains	:	A
	EC Number	:	3.2.1.41
	Engineered	:	YES
	Expression System	:	PICHIA PASTORIS
	Expression System Strain	:	GS115
	Expression System Taxid	:	644223
	Expression System Vector	:	PPIC9K
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 22-904
	Mutation	:	YES
	Organism Common	:	BARLEY
	Organism Scientific	:	HORDEUM VULGARE
	Organism Taxid	:	4513

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 15)

No.	Name	Count	Type	Full Name
1	BCD	1	Ligand/Ion	BETA-CYCLODEXTRIN
2	CA	2	Ligand/Ion	CALCIUM ION
3	GOL	7	Ligand/Ion	GLYCEROL
4	IOD	5	Ligand/Ion	IODIDE ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:298 , LYS A:763 , VAL A:851 , ASN A:852 , ARG A:859 , HOH A:2535 , HOH A:2548 , HOH A:2549	BINDING SITE FOR RESIDUE GOL A1886
02	AC2	SOFTWARE	GLU A:258 , ARG A:471 , GLU A:510 , TRP A:512 , PHE A:539 , TYR A:637 , ALA A:640 , HIS A:641 , ASP A:642 , PHE A:682 , HOH A:2162 , HOH A:2550	BINDING SITE FOR RESIDUE GOL A1887
03	AC3	SOFTWARE	TYR A:357 , HIS A:404 , ALA A:438 , ASP A:473 , LEU A:474 , HOH A:2551 , HOH A:2552 , HOH A:2553	BINDING SITE FOR RESIDUE GOL A1888
04	AC4	SOFTWARE	CYS A:95 , GLN A:96 , LEU A:97 , GLY A:113 , LEU A:114 , TYR A:196 , HOH A:2554	BINDING SITE FOR RESIDUE GOL A1889
05	AC5	SOFTWARE	ASN A:219 , HIS A:311 , PHE A:312 , ALA A:313 , VAL A:315 , VAL A:360 , LYS A:366 , SER A:414 , HOH A:2126	BINDING SITE FOR RESIDUE GOL A1890
06	AC6	SOFTWARE	LYS A:323 , PHE A:324 , VAL A:325 , ASP A:351 , GLY A:703 , ASP A:704 , TRP A:705 , HOH A:2211 , HOH A:2556	BINDING SITE FOR RESIDUE GOL A1891
07	AC7	SOFTWARE	LYS A:480 , ARG A:481 , ILE A:524 , HOH A:2336	BINDING SITE FOR RESIDUE GOL A1892
08	AC8	SOFTWARE	GLN A:348 , ASP A:351 , TYR A:353 , ASN A:701 , HOH A:2189 , HOH A:2232 , HOH A:2233	BINDING SITE FOR RESIDUE CA A1893
09	AC9	SOFTWARE	SER A:297 , LEU A:301 , GLY A:393 , HOH A:2015 , HOH A:2045	BINDING SITE FOR RESIDUE CA A1894
10	BC1	SOFTWARE	TRP A:512 , PHE A:514 , ASP A:541 , ARG A:544 , ASN A:551 , PHE A:553 , ASN A:643 , ARG A:697 , HOH A:2403 , HOH A:2550 , HOH A:2557 , HOH A:2558 , HOH A:2559	BINDING SITE FOR RESIDUE BCD A1895
11	BC2	SOFTWARE	THR A:495	BINDING SITE FOR RESIDUE IOD A1896
12	BC3	SOFTWARE	LYS A:487	BINDING SITE FOR RESIDUE IOD A1899

(no "SS Bond" information available for 2Y4S)

(no "Cis Peptide Bond" information available for 2Y4S)

(no "SAP(SNP)/Variant" information available for 2Y4S)

(no "PROSITE Motif" information available for 2Y4S)

(no "Exon" information available for 2Y4S)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:863
 aligned with O48541_HORVU | O48541 from UniProtKB/TrEMBL  Length:904

    Alignment length:883
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             505                                                                                                                                                                                                                                                                                                                                                                                                               
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           504 |                                                                                                                                                                                                                                                                                                                                                                                                               
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502 | |   511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       901   
         O48541_HORVU    23 FMPDARAYWVTSDLIAWNVGELEAQSVCLYASRAAAMSLSPSNGGIQGYDSKVELQPESAGLPETVTQKFPFISSYRAFKVPSSVDVASLVKCQLVVASFGADGKHVDVTGLQLPGVLDDMFAYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENRYYLYEVDVYHPTKAQVLKCLAGDPYARSLSANGARTWLVDINNETLKPASWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRTMV-TKSALQSLTTDAHGVDGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGTGIGSFNDRIRDAINGGNPFGNPLQQGFNTGLFLEPNGFYQGNEADTRRSLATYADQIQIGLAGNLRDYVLISHTGEAKKGSEIHTFDGLPVGYTASPIETINYVSAHDNETLFDVISVKTPMILSVDERCRINHLASSMMALSQGIPFFHAGDEILRSKSIDRDSYNSGDWFNKLDFTYETNNWGVGLPPSEKNEDNWPLMKPRLENPSFKPAKGHILAALDSFVDILKIRYSSPLFRLSTANDIKQRVRFHNTGPSLVPGVIVMGIEDARGESPEMAQLDTNFSYVVTVFNVCPHEVSMDIPALASMGFELHPVQVNSSDTLVRKSAYEAATGRFTVPGRTVSVFVEPRC 904
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------CBM_48-2y4sA01 A:129-213                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------Alpha-amylase-2y4sA02 A:380-541                                                                                                                                   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------DUF3372-2y4sA03 A:712-884                                                                                                                                                    - Pfam domains
         Sec.struct. author ......eeeee..eeee...-----.eeeeee.......-------....eeeeeee.....hhhhhhhhhhhh..eeee.....hhhhhh..eeeee.--------....eehhhhhhhhhh.....eeee...eeeeeee.....eeeeeee......eeeeee.eee..eeeeeee.hhh..eeeeeeeee......eeeeee........hhhhh.ee.....hhhhh..hhhhhhhhh....hhhhh.eeeehhhhhhhh..........hhhhhhh..hhhhhhhhhhhhhh..eeee...eee.....hhhhh...hhhhhh......hhhhhhhhhhh..........eeeeeee.hhhh.....hhhhhhhhhhhhhhhhh..eeeeee...............hhhhhh.........................hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhheeee....hhhhhhhh...............eeeehhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhh......eee.....eee................hhh.eee........hhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeeee.hhhhh.......hhhhhhhhhhh...............hhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheee..........eeeeeee...............eeeeeeeee.....eeee.hhhh....eehhhhhh....hhhhheee....eeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y4s A   3 FMPDARAYWVTSDLIAWNVG-----SVCLYASRAAAMSL-------QGYDSKVELQPESAGLPETVTQKFPFISSYRAFRVPSSVDVASLVKCQLVVAS--------DVTGLQLPGVLDDMFAYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENRYYLYEVDVYHPTKAQVLKCLAGDPYARSLSANGARTWLVDINNETLKPASWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRTMMRAKSALQSLTTDAHGVDGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGTGIGSFNDRIRDAINGGNPFGNPLQQGFNTGLFLEPNGFYQGNEADTRRSLATYADQIQIGLAGNLRDYVLISHTGEAKKGSEIHTFDGLPVGYTASPIETINYVSAHDNETLFDVISVKTPMILSVDERCRINHLASSMMALSQGIPFFHAGDEILRSKSIDRDSYNSGDWFNKLDFTYETNNWGVGLPPSEKNEDNWPLMKPRLENPSFKPAKGHILAALDSFVDILKIRYSSPLFRLSTANDIKQRVRFHNTGPSLVPGVIVMGIEDARGESPEMAQLDTNFSYVVTVFNVCPHEVSMDIPALASMGFELHPVQVNSSDTLVRKSAYEAATGRFTVPGRTVSVFVEPRC 885
                                    12        22     |  32        |-      | 52        62        72        82        92        |-       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882   
                                              22    28           41      49                                                 101      110

Chain A from PDB  Type:PROTEIN  Length:863
 aligned with Q9S7S8_HORVU | Q9S7S8 from UniProtKB/TrEMBL  Length:962

    Alignment length:883
                                    89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959   
         Q9S7S8_HORVU    80 FMPDARAYWVTSDLIAWNVGELEAQSVCLYASRAAAMSLSPSNGGIQGYDSKVELQPESAGLPETVTQKFPFISSYRAFRVPSSVDVASLVKCQLVVASFGADGKHVDVTGLQLPGVLDDMFAYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENRYYLYEVDVYHPTKAQVLKCLAGDPYARGLSANGARTWLVDINNETLKPASWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSDSRGAFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRTMMRAKSALQSLTTDAHGVDGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGTGIGSFNDRIRDAINGGNPFGNPLQQGFNTGLFLEPNGFYQGNEADTRRSLATYADQIQIGLAGNLRDYVLISHTGEAKKGSEIHTFDGLPVGYTASPIETINYVSAHDNETLFDVISVKTPMILSVDERCRINHLASSMMALSQGIPFFHAGDEILRSKSIDRDSYNSGDWFNKLDFTYETNNWGVGLPPSEKNEDNWPLMKPRLENPSFKPAKGHILAALDSFVDILKIRYSSPLFRLSTANDIKQRVRFHNTGPSLVPGVIVMGIEDARGESPEMAQLDTNFSYVVTVFNVCPHEVSMDIPALASMGFELHPVQVNSSDTLVRKSAYESATCRFTVPGRTVSVFVEPRC 962
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------CBM_48-2y4sA01 A:129-213                                                             ----------------------------------------------------------------------------------------------------------------------------------------------------------------------Alpha-amylase-2y4sA02 A:380-541                                                                                                                                   --------------------------------------------------------------------------------------------------------------------------------------------------------------------------DUF3372-2y4sA03 A:712-884                                                                                                                                                    - Pfam domains
         Sec.struct. author ......eeeee..eeee...-----.eeeeee.......-------....eeeeeee.....hhhhhhhhhhhh..eeee.....hhhhhh..eeeee.--------....eehhhhhhhhhh.....eeee...eeeeeee.....eeeeeee......eeeeee.eee..eeeeeee.hhh..eeeeeeeee......eeeeee........hhhhh.ee.....hhhhh..hhhhhhhhh....hhhhh.eeeehhhhhhhh..........hhhhhhh..hhhhhhhhhhhhhh..eeee...eee.....hhhhh...hhhhhh......hhhhhhhhhhh..........eeeeeee.hhhh.....hhhhhhhhhhhhhhhhh..eeeeee...............hhhhhh.........................hhhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhh.hhhhhh.hhhhheeee....hhhhhhhh...............eeeehhhhhhhhh..........................hhhhhhhhhhhhhhhhhhhhh......eee.....eee................hhh.eee........hhhhhhhhhh....hhhhhhhhhhhhhhhhhh...eeeee.hhhhh.......hhhhhhhhhhh...............hhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhheee..........eeeeeee...............eeeeeeeee.....eeee.hhhh....eehhhhhh....hhhhheee....eeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2y4s A   3 FMPDARAYWVTSDLIAWNVG-----SVCLYASRAAAMSL-------QGYDSKVELQPESAGLPETVTQKFPFISSYRAFRVPSSVDVASLVKCQLVVAS--------DVTGLQLPGVLDDMFAYTGPLGAVFSEDSVSLHLWAPTAQGVSVCFFDGPAGPALETVQLKESNGVWSVTGPREWENRYYLYEVDVYHPTKAQVLKCLAGDPYARSLSANGARTWLVDINNETLKPASWDELADEKPKLDSFSDITIYELHIRDFSAHDGTVDSDSRGGFRAFAYQASAGMEHLRKLSDAGLTHVHLLPSFHFAGVDDIKSNWKFVDECELATFPPGSDMQQAAVVAIQEEDPYNWGYNPVLWGVPKGSYASDPDGPSRIIEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCGISSVLDKIVPGYYVRRDTNGQIENSAAMNNTASEHFMVDRLIVDDLLNWAVNYKVDGFRFDLMGHIMKRTMMRAKSALQSLTTDAHGVDGSKIYLYGEGWDFAEVARNQRGINGSQLNMSGTGIGSFNDRIRDAINGGNPFGNPLQQGFNTGLFLEPNGFYQGNEADTRRSLATYADQIQIGLAGNLRDYVLISHTGEAKKGSEIHTFDGLPVGYTASPIETINYVSAHDNETLFDVISVKTPMILSVDERCRINHLASSMMALSQGIPFFHAGDEILRSKSIDRDSYNSGDWFNKLDFTYETNNWGVGLPPSEKNEDNWPLMKPRLENPSFKPAKGHILAALDSFVDILKIRYSSPLFRLSTANDIKQRVRFHNTGPSLVPGVIVMGIEDARGESPEMAQLDTNFSYVVTVFNVCPHEVSMDIPALASMGFELHPVQVNSSDTLVRKSAYEAATGRFTVPGRTVSVFVEPRC 885
                                    12        22     |  32        |-      | 52        62        72        82        92        |-       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822       832       842       852       862       872       882   
                                              22    28           41      49                                                 101      110

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2Y4S)

(no "CATH Domain" information available for 2Y4S)

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GHD (106)

Family: CBM_48 (8)

Hordeum vulgare (Barley) (2)

CBM_48-2y4sA01

A:129-213

Clan: Glyco_hydro_tim (488)

Family: Alpha-amylase (138)

Hordeum vulgare (Barley) (8)

Alpha-amylase-2y4sA02

A:380-541

Clan: no clan defined [family: DUF3372] (2)

Family: DUF3372 (2)

Hordeum vulgare (Barley) (2)

DUF3372-2y4sA03

A:712-884

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (Q9S7S8_HORVU | Q9S7S8)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016798	hydrolase activity, acting on glycosyl bonds	Catalysis of the hydrolysis of any glycosyl bond.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0051060	pullulanase activity	Catalysis of the hydrolysis of (1,6)-alpha-D-glucosidic linkages in pullulan (a linear polymer of alpha-(1,6)-linked maltotriose units) and in amylopectin and glycogen, and the a- and b-limit dextrins of amylopectin and glycogen.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Chain A (O48541_HORVU | O48541)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	Catalysis of the hydrolysis of any O-glycosyl bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0051060	pullulanase activity	Catalysis of the hydrolysis of (1,6)-alpha-D-glucosidic linkages in pullulan (a linear polymer of alpha-(1,6)-linked maltotriose units) and in amylopectin and glycogen, and the a- and b-limit dextrins of amylopectin and glycogen.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2y4s)

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	2y4s
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	O48541_HORVU \| O48541
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	Q9S7S8_HORVU \| Q9S7S8
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	3.2.1.41
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		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q9S7S8_HORVU \| Q9S7S8
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	O48541_HORVU \| O48541	:	2y5e 4aio 4cvw

2x4c	BARLEY LIMIT DEXTRINASE IN COMPLEX WITH ALPHA-CYCLODEXTRIN

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 15)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (3, 3)

Gene Ontology (8, 13)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File