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Title :   THE STRUCTURE OF THE 2:2 (FULLY OCCUPIED) COMPLEX BETWEEN STEAROYL ACYL CARRIER PROTEIN DESATURASE FROM RICINUS COMMUNIS (CASTOR BEAN) AND ACYL CARRIER PROTEIN.

Authors :   J. E. Guy, M. Moche, E. Whittle, J. Lengqvist, J. Shanklin, Y. Lindqvist

Date :   22 Nov 10 (Deposition) - 07 Sep 11 (Release) - 26 Oct 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.35

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Oxidoreductase-Lipid Binding Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. E. Guy, E. Whittle, M. Moche, J. Lengqvist, Y. Lindqvist, J. Shanklin
Remote Control Of Regioselectivity In Acyl-Acyl Carrier Protein-Desaturases.
Proc. Natl. Acad. Sci. Usa V. 108 16594 2011
PubMed-ID: 21930947 | Reference-DOI: 10.1073/PNAS.1110221108

Molecule 1 - ACYL-[ACYL-CARRIER-PROTEIN] DESATURASE, CHLOROPLASTIC
	Chains	:	A, B
	EC Number	:	1.14.19.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	CASTOR BEAN
	Organism Scientific	:	RICINUS COMMUNIS
	Organism Taxid	:	3988
	Synonym	:	DELTA(9) STEAROYL-ACYL CARRIER PROTEIN DESATURASE, STEAROYL-ACP DESATURASE

Molecule 2 - ACYL CARRIER PROTEIN 1, CHLOROPLASTIC
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Common	:	SPINACH
	Organism Scientific	:	SPINACIA OLERACEA
	Organism Taxid	:	3562
	Other Details	:	SER38 CHAIN D IS A PHOSPHOSERINE, IN CHAIN C IT IS ALSO LINKED TO A FRAGMENT OF PANTETHEINE
	Synonym	:	ACP I, ACYL CARRIER PROTEIN I

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 11)

No.	Name	Count	Type	Full Name
1	CA	2	Ligand/Ion	CALCIUM ION
2	CAC	2	Ligand/Ion	CACODYLATE ION
3	FE	4	Ligand/Ion	FE (III) ION
4	PNY	1	Ligand/Ion	(2R)-2,4-DIHYDROXY-3,3-DIMETHYL-N-{3-OXO-3-[(2-SULFANYLETHYL)AMINO]PROPYL}BUTANAMIDE
5	SEP	2	Mod. Amino Acid	PHOSPHOSERINE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:105 , GLU A:143 , HIS A:146 , GLU A:229 , FE A:402 , CAC A:501	BINDING SITE FOR RESIDUE FE A 401
2	AC2	SOFTWARE	GLU A:143 , GLU A:196 , GLU A:229 , FE A:401 , CAC A:501	BINDING SITE FOR RESIDUE FE A 402
3	AC3	SOFTWARE	GLU A:106 , ASN A:144 , ASP A:148 , CA B:403	BINDING SITE FOR RESIDUE CA A 403
4	AC4	SOFTWARE	GLU A:105 , TYR A:111 , GLU A:143 , GLU A:196 , THR A:199 , GLU A:229 , FE A:401 , FE A:402	BINDING SITE FOR RESIDUE CAC A 501
5	AC5	SOFTWARE	GLU B:105 , GLU B:143 , HIS B:146 , GLU B:229 , FE B:402 , CAC B:501	BINDING SITE FOR RESIDUE FE B 401
6	AC6	SOFTWARE	GLU B:143 , GLU B:196 , GLU B:229 , FE B:401 , CAC B:501	BINDING SITE FOR RESIDUE FE B 402
7	AC7	SOFTWARE	CA A:403 , GLU B:106 , ASN B:144 , ASP B:148	BINDING SITE FOR RESIDUE CA B 403
8	AC8	SOFTWARE	GLU B:105 , TYR B:111 , GLU B:143 , GLU B:229 , FE B:401 , FE B:402	BINDING SITE FOR RESIDUE CAC B 501
9	AC9	SOFTWARE	SEP C:38	BINDING SITE FOR RESIDUE PNY C1138

(no "SS Bond" information available for 2XZ1)

(no "Cis Peptide Bond" information available for 2XZ1)

(no "SAP(SNP)/Variant" information available for 2XZ1)

Asymmetric/Biological Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CARRIER	PS50075	Carrier protein (CP) domain profile.	ACP1_SPIOL	59-134	2	C:3-78 D:3-78
2	PHOSPHOPANTETHEINE	PS00012	Phosphopantetheine attachment site.	ACP1_SPIOL	89-104	2	C:33-48 D:33-48
3	FATTY_ACID_DESATUR_2	PS00574	Fatty acid desaturases family 2 signature.	STAD_RICCO	316-335	2	A:283-302 B:283-302

(no "Exon" information available for 2XZ1)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:353
 aligned with STAD_RICCO | P22337 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:353
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393   
           STAD_RICCO    44 VENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 396
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................hhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.hhhh..eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FATTY_ACID_DESATUR_2------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xz1 A  11 VENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 363
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360

Chain B from PDB  Type:PROTEIN  Length:348
 aligned with STAD_RICCO | P22337 from UniProtKB/Swiss-Prot  Length:396

    Alignment length:348
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388        
           STAD_RICCO    49 KPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 396
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................hhhhhhhhhhhhhhhhhhhhhhh.hhhhh.hhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.hhhh..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FATTY_ACID_DESATUR_2------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2xz1 B  16 KPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 363
                                    25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355

Chain C from PDB  Type:PROTEIN  Length:82
 aligned with ACP1_SPIOL | P07854 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:82
                                    66        76        86        96       106       116       126       136  
           ACP1_SPIOL    57 AKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIESLLEKKA 138
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh............hhhhh.hhhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --CARRIER  PDB: C:3-78 UniProt: 59-134                                        ---- PROSITE (1)
                PROSITE (2) --------------------------------PHOSPHOPANTETHEI---------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 2xz1 C   1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADsLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLEKKA  82
                                    10        20        30       |40        50        60        70        80  
                                                                38-SEP

Chain D from PDB  Type:PROTEIN  Length:82
 aligned with ACP1_SPIOL | P07854 from UniProtKB/Swiss-Prot  Length:138

    Alignment length:82
                                    66        76        86        96       106       116       126       136  
           ACP1_SPIOL    57 AKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIESLLEKKA 138
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhh......hhhhh...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --CARRIER  PDB: D:3-78 UniProt: 59-134                                        ---- PROSITE (1)
                PROSITE (2) --------------------------------PHOSPHOPANTETHEI---------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 2xz1 D   1 AKKETIDKVSDIVKEKLALGADVVVTADSEFSKLGADsLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLEKKA  82
                                    10        20        30       |40        50        60        70        80  
                                                                38-SEP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2XZ1)

(no "CATH Domain" information available for 2XZ1)

(no "Pfam Domain" information available for 2XZ1)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (STAD_RICCO | P22337)

molecular function
	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	Catalysis of the reaction: stearoyl-[acyl-carrier protein] + reduced acceptor + O2 = oleoyl-[acyl-carrier protein] + acceptor + H2O. The enzyme requires ferredoxin.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0006633	fatty acid biosynthetic process	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Chain C,D (ACP1_SPIOL | P07854)

molecular function
	GO:0031177	phosphopantetheine binding	Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).
biological process
	GO:0006633	fatty acid biosynthetic process	The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
	GO:0006631	fatty acid metabolic process	The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2xz1)

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	2xz1
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	ACP1_SPIOL \| P07854
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	STAD_RICCO \| P22337
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	1.14.19.2
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UniProtKB/Swiss-Prot
	ACP1_SPIOL \| P07854	:	2ava 2fva 2fve 2fvf 2xz0
	STAD_RICCO \| P22337	:	1afr 1oq4 1oq7 1oq9 1oqb 2j2f 2xz0 4v0j

1afr	STEAROYL-ACYL CARRIER PROTEIN DESATURASE FROM CASTOR SEEDS
1oq4	THE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN STEAROYL ACYLCARRIER PROTEIN DESATURASE FROM RICINUS COMMUNIS (CASTORBEAN) AND AZIDE.
1oq7	THE CRYSTAL STRUCTURE OF THE IRON FREE ( APO-)FORM OFSTEAROYL ACYL CARRIER PROTEIN DESATURASE FROM RICINUSCOMMUNIS (CASTOR BEAN).
1oq9	THE CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN STEAROYL ACYLCARRIER PROTEIN DESATURASE FROM RICINUS COMMUNIS (CASTORBEAN) AND ACETATE.
1oqb	THE CRYSTAL STRUCTURE OF THE ONE-IRON FORM OF THE DI-IRONCENTER IN STEAROYL ACYL CARRIER PROTEIN DESATURASE FROMRICINUS COMMUNIS (CASTOR BEAN).
2j2f	THE T199D MUTANT OF STEAROYL ACYL CARRIER PROTEIN DESATURASE FROM RICINUS COMMUNIS ( CASTOR BEAN)
2xz0	THE STRUCTURE OF THE 2:1 (PARTIALLY OCCUPIED) COMPLEX BETWEEN STEAROYL ACYL CARRIER PROTEIN DESATURASE FROM RICINUS COMMUNIS (CASTOR BEAN) AND ACYL CARRIER PROTEIN.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 11)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 6)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 15)

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