2XL4 - JenaLib

Title :   LNTA, A VIRULENCE FACTOR FROM LISTERIA MONOCYTOGENES

Authors :   A. Lebreton, V. Job, T. Thamnam, A. Camejo, P. J. Mattei, B. Regnault, D. A. Dessen, P. Cossart, H. Bierne

Date :   19 Jul 10 (Deposition) - 02 Feb 11 (Release) - 06 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym./Biol. Unit : A

Keywords :   Toxin, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Lebreton, G. Lakisic, V. Job, L. Fritsch, T. N. Tham, A. Camejo, P. J. Mattei, B. Regnault, M. A. Nahori, D. Cabanes, A. Gautreau, S. Ait-Si-Ali, A. Dessen, P. Cossart, H. Bierne
A Bacterial Protein Targets The Bahd1 Chromatin Complex To Stimulate Type Iii Interferon Response.
Science V. 331 1319 2011
PubMed-ID: 21252314 | Reference-DOI: 10.1126/SCIENCE.1200120

Compounds

Molecule 1 - LMO0438 PROTEIN
	Atcc	:	BAA-679
	Chains	:	A
	Fragment	:	RESIDUES 34-205
	Mutation	:	YES
	Organism Scientific	:	LISTERIA MONOCYTOGENES
	Organism Taxid	:	1639
	Strain	:	EGDE
	Synonym	:	LNTA

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (2, 2)

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:131 , ALA A:132	BINDING SITE FOR RESIDUE GOL A1203
2	AC2	SOFTWARE	ASP A:70 , GLU A:73 , ARG A:113 , TYR A:114 , LYS A:163	BINDING SITE FOR RESIDUE GOL A1204

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:147
 aligned with LNTA_LISMO | Q8Y9T5 from UniProtKB/Swiss-Prot  Length:205

    Alignment length:147
                                    65        75        85        95       105       115       125       135       145       155       165       175       185       195       
           LNTA_LISMO    56 RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLD 202
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2xl4 A  56 RPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNINQmIGTmKRYQQEILSIDAIKRASEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLD 202
                                    65        75        85        95       105 |   | 115       125       135       145       155       165       175       185       195       
                                                                             107-MSE                                                                                           
                                                                                 111-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (3, 3)

Asymmetric/Biological Unit(show GO term definitions)

Chain A (LNTA_LISMO | Q8Y9T5)

biological process
	GO:0009405	pathogenesis
cellular component
	GO:0005576	extracellular region
	GO:0042025	host cell nucleus

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	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
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Still Images

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
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	2xl4
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Description