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(-) Description

Title :  STRUCTURE OF THE N-TERMINAL DOMAIN OF OMP85 FROM THE THERMOPHILIC CYANOBACTERIUM THERMOSYNECHOCOCCUS ELONGATUS
 
Authors :  T. Arnold, K. Zeth, D. Linke
Date :  13 Mar 10  (Deposition) - 23 Mar 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.97
Chains :  Asym./Biol. Unit :  X
Keywords :  Chaperone, Toc75, Protein Targeting (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Arnold, K. Zeth, D. Linke
Omp85 From The Thermophilic Cyanobacterium Thermosynechococcus Elongatus Differs From Proteobacterial Omp85 In Structure And Domain Composition.
J. Biol. Chem. V. 285 18003 2010
PubMed-ID: 20351097  |  Reference-DOI: 10.1074/JBC.M110.112516

(-) Compounds

Molecule 1 - TLR1789 PROTEIN
    Chains: X
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL DOMAIN, RESIDUES 86-320
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS
    Organism Taxid: 146786
    Other Details: CONTAINS THREE POTRA DOMAINS
    Synonym: OMP85

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : X

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2X8X)

(-) Sites  (0, 0)

(no "Site" information available for 2X8X)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2X8X)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu X:68 -Pro X:69

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2X8X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2X8X)

(-) Exons   (0, 0)

(no "Exon" information available for 2X8X)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain X from PDB  Type:PROTEIN  Length:235
 aligned with Q8DI03_THEEB | Q8DI03 from UniProtKB/TrEMBL  Length:675

    Alignment length:235
                                    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315     
         Q8DI03_THEEB    86 DEPKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPLGVRITFVVRPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQDPRKVNLILNIKERNT 320
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------------------------------------------------------------------POTRA_2-2x8xX01 X:144-218                                                  ----Surf_Ag_VNR-2x8xX02 X:223-299                                                -- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------Surf_Ag_VNR-2x8xX03 X:223-299                                                -- Pfam domains (2)
         Sec.struct. author ....eeeeeeeee..hhhhhhhhhhhh......eehhhhhhhhhhhhhh...eeeeeeeeeee..eeeeeeeeee.....eeeee.....hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.....eeeeeeee....eeeeeee...eeeeeeee............hhhhhhh..........hhhhhhhhhhhhhhhh.eeeeeeeeee......eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x8x X  67 DEPKVLIAEVVVEGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPLGVRITFVVRPYPVLRAVQVAGNQVLTQEKVNEIFAPQIGRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFLNKEGEPTKQRTRDFVISREMDTQPGVVLNQKTVQADLRRLFELGLFEDVQVALEPGQNPRRVNLILNIKERNT 301
                                    76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2X8X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2X8X)

(-) Pfam Domains  (2, 3)

Asymmetric/Biological Unit
(-)
Clan: POTRA (5)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain X   (Q8DI03_THEEB | Q8DI03)
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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  Cis Peptide Bonds
    Glu X:68 - Pro X:69   [ RasMol ]  
 

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