2X8C - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   THIOREDOXIN GLUTATHIONE REDUCTASE FROM SCHISTOSOMA MANSONI WITH THE REDUCED C-TERMINAL END

Authors :   F. Angelucci, D. Dimastrogiovanni, G. Boumis, M. Brunori, A. E. Miele, F. Saccoccia, A. Bellelli

Date :   08 Mar 10 (Deposition) - 21 Jul 10 (Release) - 20 Oct 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym./Biol. Unit : A,B

Keywords :   Oxidoreductase-Flavoprotein Complex, Detoxification Pathway (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Angelucci, D. Dimastrogiovanni, G. Boumis, M. Brunori, A. E. Miele, F. Saccoccia, A. Bellelli
Mapping The Catalytic Cycle Of Schistosoma Mansoni Thioredoxin Glutathione Reductase By X-Ray Crystallography
J. Biol. Chem. V. 285 32557 2010
PubMed-ID: 20659890 | Reference-DOI: 10.1074/JBC.M110.141960
(for further references see the PDB file header)

Molecule 1 - THIOREDOXIN GLUTATHIONE REDUCTASE
	Chains	:	A, B
	EC Number	:	1.6.4.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-4T1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Common	:	BLOOD FLUKE
	Organism Scientific	:	SCHISTOSOMA MANSONI
	Organism Taxid	:	6183

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 6)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
3	PGE	3	Ligand/Ion	TRIETHYLENE GLYCOL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:114 , GLY A:115 , GLY A:116 , SER A:117 , GLY A:118 , LEU A:136 , ASP A:137 , TYR A:138 , GLY A:152 , THR A:153 , CYS A:154 , VAL A:157 , GLY A:158 , CYS A:159 , LYS A:162 , ALA A:226 , GLY A:228 , ALA A:256 , THR A:257 , GLY A:258 , TYR A:296 , ARG A:393 , VAL A:400 , GLY A:432 , ASP A:433 , GLN A:440 , LEU A:441 , THR A:442 , PRO A:443 , HIS B:571	BINDING SITE FOR RESIDUE FAD A1599
2	AC2	SOFTWARE	LEU A:320 , GLN A:326 , GLY A:333 , ASP A:334 , LYS A:345	BINDING SITE FOR RESIDUE PGE A1595
3	AC3	SOFTWARE	SER A:172 , HIS A:173 , GLU A:176 , ALA A:306 , SER A:307 , TYR A:335 , HIS A:339	BINDING SITE FOR RESIDUE PGE A1596
4	AC4	SOFTWARE	ASP A:488 , GLU A:491 , LYS A:492	BINDING SITE FOR RESIDUE PEG A1597
5	AC5	SOFTWARE	HIS A:571 , ILE B:113 , GLY B:114 , GLY B:115 , GLY B:116 , SER B:117 , GLY B:118 , LEU B:136 , ASP B:137 , TYR B:138 , VAL B:139 , GLY B:152 , THR B:153 , CYS B:154 , VAL B:157 , GLY B:158 , CYS B:159 , LYS B:162 , ALA B:226 , GLY B:228 , ALA B:256 , THR B:257 , GLY B:258 , TYR B:296 , ARG B:393 , VAL B:400 , GLY B:432 , ASP B:433 , GLN B:440 , LEU B:441 , THR B:442 , PRO B:443	BINDING SITE FOR RESIDUE FAD B1599
6	AC6	SOFTWARE	LEU B:320 , GLN B:326 , ASP B:334 , GLU B:337	BINDING SITE FOR RESIDUE PGE B1600

Asymmetric/Biological Unit

No.	Residues
1	A:154	-	A:159
2	B:154	-	B:159

Asymmetric/Biological Unit

No.	Residues
1	Val A:72	-	Pro A:73
2	His A:571	-	Pro A:572
3	Val B:72	-	Pro B:73
4	His B:571	-	Pro B:572

(no "SAP(SNP)/Variant" information available for 2X8C)

(no "PROSITE Motif" information available for 2X8C)

(no "Exon" information available for 2X8C)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:588
 aligned with Q962Y6_SCHMA | Q962Y6 from UniProtKB/TrEMBL  Length:598

    Alignment length:588
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585        
         Q962Y6_SCHMA     6 GTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLHVTKKSGVSPIV 593
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhh....eeee.hhh.hhhhh...hhhhhh.....eeee..eeeehhhhhhhh....hhhhhhh.....eeeeee..hhhhhhhhhhhhhhh..eeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee........hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..eeeeee..eeeee.....eeeeeeeeeee....ee......hhhhhh.hhhhhh........eeeee.hhhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhhh...eeee.eeeeeeeeee..........eeeeeeee....eeeeee.eeeee..ee.hhhhh.hhhhh.....................eee.hhhh.....hhhhhhhhhhhhhhhhhh............eee.....eeeee.hhhhhhhhhh...eeeeeeee.hhhhhh.......eeeeeeee.hhh..eeeeeee..hhhhhhhhhhhhhhh..hhhhhhhh......hhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2x8c A   6 GTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLHVTKKSGVSPIV 593
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585

Chain B from PDB  Type:PROTEIN  Length:593
 aligned with Q962Y6_SCHMA | Q962Y6 from UniProtKB/TrEMBL  Length:598

    Alignment length:593
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595   
         Q962Y6_SCHMA     6 GTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLHVTKKSGVSPIVSGCXG 598
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------Glutaredoxin-2x8cB05 B:20-82                                   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-2x8cB01 B:288-365                                                   -------------------------------------------------------------------------------------------------------Pyr_redox_dim-2x8cB07 B:469-582                                                                                   ---------------- Pfam domains (1)
           Pfam domains (2) --------------Glutaredoxin-2x8cB06 B:20-82                                   -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-2x8cB02 B:288-365                                                   -------------------------------------------------------------------------------------------------------Pyr_redox_dim-2x8cB08 B:469-582                                                                                   ---------------- Pfam domains (2)
           Pfam domains (3) -------------------------------------------------------------------------------------------------------Pyr_redox_2-2x8cB03 B:109-439                                                                                                                                                                                                                                                                                                              --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------------------------------------------------------------------------------Pyr_redox_2-2x8cB04 B:109-439                                                                                                                                                                                                                                                                                                              --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhh.eeeee...hhhhhhhhhhhhhh....eeee.hhh.hhhhhhhhhhhhhh.....eeee..eeeehhhhhhhhhhh.hhhhhh......eeeeee..hhhhhhhhhhhhh....eeee...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........eehhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeeeee..eeeee.....eeeeeeeeeee...eee......hhhhhheehhhhh........eeee..hhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh..eee..eeeeeeeeee..........eeeeeeee......eeee.eeee...eee.hhhh.hhhhh.....................eee..........hhhhhhhhhhhhhhhhhhh...........eee.....eeeee.hhhhhhhhhh...eeeeeeee..hhhhhh......eeeeeeee.....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhhh......hhhhhhh.................. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x8c B   6 GTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESKYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERPKYPEIPGAVEYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYMENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSETFTTLHVTKKSGVSPIVSGCCG 598
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2X8C)

(no "CATH Domain" information available for 2X8C)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (Q962Y6_SCHMA | Q962Y6)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016668	oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor	Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP.
	GO:0015035	protein disulfide oxidoreductase activity	Catalysis of the reaction: a protein with reduced sulfide groups = a protein with oxidized disulfide bonds.
	GO:0004791	thioredoxin-disulfide reductase activity	Catalysis of the reaction: NADP(+) + thioredoxin = H(+) + NADPH + thioredoxin disulfide.
biological process
	GO:0045454	cell redox homeostasis	Any process that maintains the redox environment of a cell or compartment within a cell.
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0005623	cell	The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		His A:571 - Pro A:572	[ RasMol ]
		His B:571 - Pro B:572	[ RasMol ]
		Val A:72 - Pro A:73	[ RasMol ]
		Val B:72 - Pro B:73	[ RasMol ]

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	2x8c
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	1.6.4.5
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UniProtKB/TrEMBL
	Q962Y6_SCHMA \| Q962Y6	:	2v6o 2x8g 2x8h 2x99 3h4k

2v6o	STRUCTURE OF SCHISTOSOMA MANSONI THIOREDOXIN- GLUTATHIONE REDUCTASE (SMTGR)
2x8g	MAPPING THE CATALYTIC CYCLE OF SCHISTOSOMA MANSONI THIOREDOXIN GLUTATHIONE REDUCTASE BY X -RAY CRYSTALLOGRAPHY
2x8h	MAPPING THE CATALYTIC CYCLE OF SCHISTOSOMA MANSONI THIOREDOXIN GLUTATHIONE REDUCTASE BY X -RAY CRYSTALLOGRAPHY
2x99	MAPPING THE CATALYTIC CYCLE OF SCHISTOSOMA MANSONI THIOREDOXIN GLUTATHIONE REDUCTASE BY X -RAY CRYSTALLOGRAPHY

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (2, 2)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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