2X4M - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA

Authors :   E. Eren, M. Murphy, J. Goguen, B. Van Den Berg

Date :   05 Feb 10 (Deposition) - 28 Jul 10 (Release) - 28 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.55

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Omptin, Transmembrane, Aspartyl Protease, Cell Outer Membrane, Protease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Eren, M. Murphy, J. Goguen, B. Van Den Berg
An Active Site Water Network In The Plasminogen Activator Pla From Yersinia Pestis
Structure V. 18 809 2010
PubMed-ID: 20637417 | Reference-DOI: 10.1016/J.STR.2010.03.013

Molecule 1 - COAGULASE/FIBRINOLYSIN
	Chains	:	A, B, C, D
	EC Number	:	3.4.23.48
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PB22
	Expression System Strain	:	C43
	Expression System Taxid	:	562
	Mutation	:	YES
	Organism Scientific	:	YERSINIA PESTIS
	Organism Taxid	:	632
	Synonym	:	PLA, PLASMINOGEN ACTIVATOR

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 37)

No.	Name	Count	Type	Full Name
1	C8E	14	Ligand/Ion	(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2	SO4	23	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 10)

No.	Name	Count	Type	Full Name
1	C8E	5	Ligand/Ion	(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	C8E	3	Ligand/Ion	(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2	SO4	5	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 9)

No.	Name	Count	Type	Full Name
1	C8E	3	Ligand/Ion	(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 4 (2, 10)

No.	Name	Count	Type	Full Name
1	C8E	3	Ligand/Ion	(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
2	SO4	7	Ligand/Ion	SULFATE ION

Asymmetric Unit (37, 37)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:236 , ASN A:238 , TYR A:290	BINDING SITE FOR RESIDUE SO4 A1295
02	AC2	SOFTWARE	ARG A:171 , HIS A:203 , ASN A:205 , ARG A:216 , HOH A:2032	BINDING SITE FOR RESIDUE SO4 A1296
03	AC3	SOFTWARE	LYS A:54 , ARG A:70 , GLU A:111 , ASP A:113 , GLN A:135 , LYS A:195	BINDING SITE FOR RESIDUE SO4 A1297
04	AC4	SOFTWARE	ALA A:103 , GLY A:145 , GLY A:146 , LYS A:161 , HOH A:2012	BINDING SITE FOR RESIDUE SO4 A1298
05	AC5	SOFTWARE	ASP A:84 , TYR A:150 , HIS A:208 , ARG A:211 , C8E A:1304 , HOH A:2033	BINDING SITE FOR RESIDUE SO4 A1299
06	AC6	SOFTWARE	ILE A:57 , ARG A:70 , TYR A:112	BINDING SITE FOR RESIDUE C8E A1300
07	AC7	SOFTWARE	LEU A:53 , TRP A:72 , ASN A:110 , ARG A:138	BINDING SITE FOR RESIDUE C8E A1301
08	AC8	SOFTWARE	TYR A:126 , LYS A:127 , GLY A:181 , GLN A:182 , LEU C:121 , ASP C:123	BINDING SITE FOR RESIDUE C8E A1302
09	AC9	SOFTWARE	PRO A:175 , TYR A:176 , ILE A:177 , TRP A:199	BINDING SITE FOR RESIDUE C8E A1303
10	BC1	SOFTWARE	MET A:30 , HIS A:208 , GLU A:217 , SO4 A:1299	BINDING SITE FOR RESIDUE C8E A1304
11	BC2	SOFTWARE	SER A:3 , ALA B:103 , GLY B:146 , LYS B:161 , HOH B:2013	BINDING SITE FOR RESIDUE SO4 B1299
12	BC3	SOFTWARE	LYS B:249 , ASP B:251 , GLU B:252	BINDING SITE FOR RESIDUE SO4 B1300
13	BC4	SOFTWARE	ARG B:171 , HIS B:203 , ASN B:205 , ARG B:216	BINDING SITE FOR RESIDUE SO4 B1301
14	BC5	SOFTWARE	ASP B:97 , SO4 B:1303	BINDING SITE FOR RESIDUE SO4 B1302
15	BC6	SOFTWARE	ASP B:84 , HIS B:208 , ARG B:211 , SO4 B:1302 , C8E B:1304	BINDING SITE FOR RESIDUE SO4 B1303
16	BC7	SOFTWARE	GLU B:29 , MET B:30 , GLU B:217 , ALA B:275 , SO4 B:1303	BINDING SITE FOR RESIDUE C8E B1304
17	BC8	SOFTWARE	LEU B:53 , GLY B:71 , TRP B:72 , ASN B:110 , GLU B:111	BINDING SITE FOR RESIDUE C8E B1305
18	BC9	SOFTWARE	LEU B:179 , ALA B:180 , GLY B:181 , ALA B:192 , LEU B:193 , PHE B:194 , THR B:227	BINDING SITE FOR RESIDUE C8E B1306
19	CC1	SOFTWARE	LYS C:54 , ARG C:70 , GLU C:111 , ASP C:113 , GLN C:135 , LYS C:195 , VAL C:228 , THR C:246	BINDING SITE FOR RESIDUE SO4 C1294
20	CC2	SOFTWARE	GLN B:92 , SER B:93 , GLU B:94 , ASN C:125 , TYR C:126 , TYR C:183 , ILE C:185	BINDING SITE FOR RESIDUE SO4 C1295
21	CC3	SOFTWARE	ASP C:84 , HIS C:208 , ARG C:211	BINDING SITE FOR RESIDUE SO4 C1296
22	CC4	SOFTWARE	ARG C:171 , HIS C:203 , ASN C:205 , ARG C:216	BINDING SITE FOR RESIDUE SO4 C1297
23	CC5	SOFTWARE	GLY A:162 , VAL A:163 , ARG A:164 , VAL C:163 , ARG C:164	BINDING SITE FOR RESIDUE SO4 C1298
24	CC6	SOFTWARE	ALA C:103 , GLY C:145 , GLY C:146 , LYS C:161 , SER D:3	BINDING SITE FOR RESIDUE SO4 C1299
25	CC7	SOFTWARE	MET C:30 , HIS C:208 , GLU C:217	BINDING SITE FOR RESIDUE C8E C1300
26	CC8	SOFTWARE	LEU C:53 , GLY C:71 , ASN C:110	BINDING SITE FOR RESIDUE C8E C1301
27	CC9	SOFTWARE	ALA C:69 , TYR C:112	BINDING SITE FOR RESIDUE C8E C1302
28	DC1	SOFTWARE	LYS D:54 , ARG D:70 , GLU D:111 , ASP D:113 , LYS D:195 , VAL D:228 , THR D:246 , HOH D:2026	BINDING SITE FOR RESIDUE SO4 D1295
29	DC2	SOFTWARE	GLY D:145 , GLY D:146 , LYS D:161 , HOH D:2009 , HOH D:2012	BINDING SITE FOR RESIDUE SO4 D1296
30	DC3	SOFTWARE	ARG D:171 , SER D:173 , ARG D:201 , HIS D:203	BINDING SITE FOR RESIDUE SO4 D1297
31	DC4	SOFTWARE	ARG D:171 , HIS D:203 , ASN D:205	BINDING SITE FOR RESIDUE SO4 D1298
32	DC5	SOFTWARE	THR D:236 , TYR D:290 , HOH D:2027	BINDING SITE FOR RESIDUE SO4 D1299
33	DC6	SOFTWARE	VAL B:163 , ARG B:164 , ARG D:164	BINDING SITE FOR RESIDUE SO4 D1300
34	DC7	SOFTWARE	ASP D:84 , HIS D:208 , ARG D:211 , C8E D:1304 , HOH D:2007	BINDING SITE FOR RESIDUE SO4 D1301
35	DC8	SOFTWARE	LYS D:54 , GLY D:55 , TRP D:72 , ASN D:110 , GLU D:111	BINDING SITE FOR RESIDUE C8E D1302
36	DC9	SOFTWARE	GLY D:55 , ASP D:56 , ALA D:69 , ARG D:70 , TYR D:112	BINDING SITE FOR RESIDUE C8E D1303
37	EC1	SOFTWARE	GLU D:29 , HIS D:208 , ARG D:211 , SO4 D:1301	BINDING SITE FOR RESIDUE C8E D1304

(no "SS Bond" information available for 2X4M)

Asymmetric Unit

No.	Residues
1	Asn C:8	-	Ile C:9

(no "SAP(SNP)/Variant" information available for 2X4M)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPTIN_1	PS00834	Aspartyl proteases, omptin family signature 1.	COLY_YERPE	115-124	4	A:95-104 B:95-104 C:95-104 D:95-104
2	OMPTIN_2	PS00835	Aspartyl proteases, omptin family signature 2.	COLY_YERPE	152-168	4	A:132-148 B:132-148 C:132-148 D:132-148

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPTIN_1	PS00834	Aspartyl proteases, omptin family signature 1.	COLY_YERPE	115-124	1	A:95-104 - - -
2	OMPTIN_2	PS00835	Aspartyl proteases, omptin family signature 2.	COLY_YERPE	152-168	1	A:132-148 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPTIN_1	PS00834	Aspartyl proteases, omptin family signature 1.	COLY_YERPE	115-124	1	- B:95-104 - -
2	OMPTIN_2	PS00835	Aspartyl proteases, omptin family signature 2.	COLY_YERPE	152-168	1	- B:132-148 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPTIN_1	PS00834	Aspartyl proteases, omptin family signature 1.	COLY_YERPE	115-124	1	- - C:95-104 -
2	OMPTIN_2	PS00835	Aspartyl proteases, omptin family signature 2.	COLY_YERPE	152-168	1	- - C:132-148 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	OMPTIN_1	PS00834	Aspartyl proteases, omptin family signature 1.	COLY_YERPE	115-124	1	- - - D:95-104
2	OMPTIN_2	PS00835	Aspartyl proteases, omptin family signature 2.	COLY_YERPE	152-168	1	- - - D:132-148

(no "Exon" information available for 2X4M)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:293
 aligned with COLY_YERPE | P17811 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:293
                                                                                                                                                                                                                                                                                                                            312  
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311|  
           COLY_YERPE    22 SSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF--   -
               SCOP domains d2x4ma_ A: automated matches                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 2x4mA00 A:2-294 OMPT-like                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeeeeeeeeeeeeee......eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeee..eeeeeeeeeee........eeeeeeee.eeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeeeee.eeeeee..eeeeeee....eeeeeeeeeeeeeeeeeeeee.eeeeeeeeeeee.eeeeeeee......eeeeeeee.eeeeeeeeeeee...eeeeeeeeeeeeeeeee.eeeeee.....eeeeeeeeeeeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------OMPTIN_1  ---------------------------OMPTIN_2         -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x4m A   2 SSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYAWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFGG 294
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Chain B from PDB  Type:PROTEIN  Length:286
 aligned with COLY_YERPE | P17811 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:286
                                                                                                                                                                                                                                                                                                                 312      
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312      
           COLY_YERPE    33 SFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF------   -
               SCOP domains d2x4mb_ B: automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2x4mB00 B:13-298 OMPT-like                                                                                                                                                                                                                                                                     CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author eeeeeeeeeeeeeeeeeeee......eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeee..eeeeeeeeeee........eeeeeeee.eeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeeeee.eeeeee..eeeeeee....eeeeeeeeeeeeeeeeeeeee.eeeeeeeeeeee.eeeeeeee......eeeeeeee.eeeeeeeeeeee...eeeeeeeeeeeeeeeee.eeeeee.....eeeeeeeeeeeeeeeeeeeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------OMPTIN_1  ---------------------------OMPTIN_2         ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x4m B  13 SFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYAWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFGGGGGG 298
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292

Chain C from PDB  Type:PROTEIN  Length:291
 aligned with COLY_YERPE | P17811 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:291
                                                                                                                                                                                                                                                                                                                           312 
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312 
           COLY_YERPE    23 SQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF-   -
               SCOP domains d2x4mc_ C: automated matches                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2x4mC00 C:3-293 OMPT-like                                                                                                                                                                                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeeeeeeeeeeeeeeeee......eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeee..eeeeeeeeeee........eeeeeeee.eeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeeeee.eeeeee..eeeeeee....eeeeeeeeeeeeeeeeeeeee.eeeeeeeeeeee.eeeeeeee......eeeeeeee.eeeeeeeeeeee...eeeeeeeeeeeeeeeee.eeeeee.....eeeeeeeeeeeeeeeeeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------OMPTIN_1  ---------------------------OMPTIN_2         ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x4m C   3 SQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYAWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFG 293
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292

Chain D from PDB  Type:PROTEIN  Length:293
 aligned with COLY_YERPE | P17811 from UniProtKB/Swiss-Prot  Length:312

    Alignment length:293
                                                                                                                                                                                                                                                                                                                            312  
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311|  
           COLY_YERPE    22 SSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYDWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRF--   -
               SCOP domains d2x4md_ D: automated matches                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains 2x4mD00 D:2-294 OMPT-like                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeeeeeeeeeeeeeeeeeeee......eeeeeeeeeeeeeeeeeeeeeee..eeeeeeeeeee..eeeeeeeeeee........eeeeeeee.eeeeeeeeeeeeeee.....eeeeeeeeeeeeeeeeeeee.eeeeee..eeeeeee....eeeeeeeeeeeeeeeeeeeee.eeeeeeeeeeee.eeeeeeee......eeeeeeee.eeeeeeeeeeee...eeeeeeeeeeeeeeeee.eeeeee.....eeeeeeeeeeeeeeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------OMPTIN_1  ---------------------------OMPTIN_2         -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2x4m D   2 SSQLIPNISPDSFTVAASTGMLSGKSHEMLYDAETGRKISQLDWKIKNVAILKGDISWDPYSFLTLNARGWTSLASGSGNMDDYAWMNENQSEWTDHSSHPATNVNHANEYDLNVKGWLLQDENYKAGITAGYQETRFSWTATGGSYSYNNGAYTGNFPKGVRVIGYNQRFSMPYIGLAGQYRINDFELNALFKFSDWVRAHDNDEHYMRDLTFREKTSGSRYYGTVINAGYYVTPNAKVFAEFTYSKYDEGKGGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFGG 294
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Membrane and cell surface proteins and peptides (2046)

Fold: Transmembrane beta-barrels (143)

Superfamily: OMPT-like (6)

Family: automated matches (3)

Protein domain: automated matches (3)

Yersinia pestis [TaxId: 632] (3)

1a	d2x4ma_	A:
1b	d2x4mb_	B:
1c	d2x4mc_	C:
1d	d2x4md_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Lipocalin (526)

Homologous Superfamily: OMPT-like (4)

Yersinia pestis. Organism_taxid: 632. (3)

1a	2x4mB00	B:13-298
1b	2x4mC00	C:3-293
1c	2x4mA00	A:2-294
1d	2x4mD00	D:2-294

(no "Pfam Domain" information available for 2X4M)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (COLY_YERPE | P17811)

molecular function
	GO:0004190	aspartic-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.
	GO:0004175	endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
	GO:0042730	fibrinolysis	A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.
	GO:0007599	hemostasis	The stopping of bleeding (loss of body fluid) or the arrest of the circulation to an organ or part.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0009279	cell outer membrane	A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Asn C:8 - Ile C:9	[ RasMol ]

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	2x4m
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UniProtKB/Swiss-Prot
	COLY_YERPE \| P17811	:	2x55 2x56 4dcb

2x55	YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA (NATIVE)
2x56	YERSINIA PESTIS PLASMINOGEN ACTIVATOR PLA (NATIVE)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 37)

Sites (37, 37)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

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SCOP Domains (1, 4)

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Gene Ontology (10, 10)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File