2X4I - JenaLib

Title :   ORF 114A FROM SULFOLOBUS ISLANDICUS RUDIVIRUS 1

Authors :   M. Oke, L. G. Carter, K. A. Johnson, H. Liu, S. A. Mcmahon, J. H. Naismith,

Date :   31 Jan 10 (Deposition) - 21 Jul 10 (Release) - 21 Jul 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: C,D  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Unknown Function, Duf1874, Archeal Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Oke, L. G. Carter, K. A. Johnson, H. Liu, S. A. Mcmahon, X. Yan, M. Kerou, N. D. Weikart, N. Kadi, M. A. Sheikh, S. Schmelz, M. Dorward, M. Zawadzki, C. Cozens, H. Falconer, H. Powers, I. M. Overton, C. A. J. Van Niekerk, X. Peng, P. Patel, R. A. Garrett, D. Prangishvili C. H. Botting, P. J. Coote, D. T. F. Dryden, G. J. Barton, U. Schwarz-Linek, G. L. Challis, G. L. Taylor, M. F. White, J. H. Naismith
The Scottish Structural Proteomics Facility: Targets, Methods And Outputs.
J. Struct. Funct. Genomics V. 11 167 2010
PubMed-ID: 20419351 | Reference-DOI: 10.1007/S10969-010-9090-Y

Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN 114
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PDEST14
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	SULFOLOBUS ISLANDICUS RUDIVIRUS 1 VARIANT XX
	Organism Taxid	:	282066
	Synonym	:	CAG38848

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (4, 4)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:105
 aligned with Y114_SIRV1 | Q8QL27 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:112
                                    11        21        31        41        51        61        71        81        91       101       111  
           Y114_SIRV1     2 NKVYLANAFSINMLTKFPTKVVIDKIDRLEFCENIDNEDIINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQISQRLEEGKILTLEEILKLYESGKVQFFEIIV 113
               SCOP domains d2x4ia_ A: automated matches                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhh.....eeeeeeeehhhhhhhhhh...eee...hhhhhhhhhhhhh................eeeeeee.-------..hhhhhhhhhhhh.eeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2x4i A   2 NKVYLANAFSINMLTKFPTKVVIDKIDRLEFCENIDNEDIINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQIS-------ILTLEEILKLYESGKVQFFEIIV 113
                                    11        21        31        41        51        61        71        81 |      91       101       111  
                                                                                                            83      91

Chain B from PDB  Type:PROTEIN  Length:103
 aligned with Y114_SIRV1 | Q8QL27 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:112
                                    11        21        31        41        51        61        71        81        91       101       111  
           Y114_SIRV1     2 NKVYLANAFSINMLTKFPTKVVIDKIDRLEFCENIDNEDIINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQISQRLEEGKILTLEEILKLYESGKVQFFEIIV 113
               SCOP domains d2x4ib_ B: automated matches                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhh.....eeeeeeeehhhhhhhhhh....ee...hhhhhhhhhhhhh................eeeeee..---------hhhhhhhhhhh...eeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 2x4i B   2 NKVYLANAFSINMLTKFPTKVVIDKIDRLEFCENIDNEDIINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQIS---------TLEEILKLYESGKVQFFEIIV 113
                                    11        21        31        41        51        61        71        81 |       - |     101       111  
                                                                                                            83        93

Chain C from PDB  Type:PROTEIN  Length:99
 aligned with Y114_SIRV1 | Q8QL27 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           Y114_SIRV1     2 NKVYLANAFSINMLTKFPTKVVIDKIDRLEFCENIDNEDIINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQISQRLEEGKILTLEEILKLYESGKVQFFEIIVD 114
               SCOP domains d2x4ic_ C: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhh.....eeeeeeeehhhhhhhhhh....ee...hhhhhhhhhhhh.................eeeeee.---------.hhhhhhh-----..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2x4i C   2 NKVYLANAFSINMLTKFPTKVVIDKIDRLEFCENIDNEDIINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQI---------LTLEEILK-----KVQFFEIIVD 114
                                    11        21        31        41        51        61        71        81|        -|      | -   |   111   
                                                                                                           82        92     99   105

Chain D from PDB  Type:PROTEIN  Length:102
 aligned with Y114_SIRV1 | Q8QL27 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:113
                                    11        21        31        41        51        61        71        81        91       101       111   
           Y114_SIRV1     2 NKVYLANAFSINMLTKFPTKVVIDKIDRLEFCENIDNEDIINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQISQRLEEGKILTLEEILKLYESGKVQFFEIIVD 114
               SCOP domains d2x4id_ D: automated matches                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) DUF1874-2x4iD01 D:2-113                                                                                         - Pfam domains (1)
           Pfam domains (2) DUF1874-2x4iD02 D:2-113                                                                                         - Pfam domains (2)
           Pfam domains (3) DUF1874-2x4iD03 D:2-113                                                                                         - Pfam domains (3)
           Pfam domains (4) DUF1874-2x4iD04 D:2-113                                                                                         - Pfam domains (4)
         Sec.struct. author ..eeee...hhhh.....eeeeeeeehhhhhhhhhh...eee...hhhhhhhhhhhhh................eeeeee..-----------hhhhhhhhh...eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 2x4i D   2 NKVYLANAFSINMLTKFPTKVVIDKIDRLEFCENIDNEDIINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKEDKLYVVQIS-----------EEILKLYESGKVQFFEIIVD 114
                                    11        21        31        41        51        61        71        81 |       -   |   101       111   
                                                                                                            83          95

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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