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(-) Description

Title :  SYNTHETICALLY MODIFIED OMPG
 
Authors :  W. Grosse, P. Reiss, S. Reitz, M. Cebi, W. Luebben, U. Koert, L. -O. Essen
Date :  19 Oct 09  (Deposition) - 14 Jul 10  (Release) - 20 Apr 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Ion-Channel Engineering, Ompg Hybrids, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  W. Grosse, P. Reiss, S. Reitz, M. Cebi, W. Luebben, U. Koert, L. -O. Esse
Structural And Functional Characterization Of A Synthetically Modified Ompg.
Bioorg. Med. Chem. V. 18 7716 2010
PubMed-ID: 20378361  |  Reference-DOI: 10.1016/J.BMC.2010.03.044

(-) Compounds

Molecule 1 - OUTER MEMBRANE PROTEIN G
    Atcc11775
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET20B
    Expression System StrainBL21(DE3) OMP9
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    MutationYES
    Organism ScientificESCHERICHIA COLI
    Organism Taxid83333
    Other DetailsY209C MUTANT CHEMICALLY MODIFIED WITH N-(2-ETHYL-IODO-ACETAMIDE)-DANSYL
    StrainK-12

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
14201Ligand/IonN-[2-({[5-(DIMETHYLAMINO)NAPHTHALEN-1-YL]SULFONYL}AMINO)ETHYL]-2-IODOACETAMIDE
2C8E6Ligand/Ion(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
3EDO1Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:13 , TYR A:35 , TYR A:196 , THR A:207 , CYS A:209 , PHE A:239 , GLU A:253 , HOH A:2073 , HOH A:2074BINDING SITE FOR RESIDUE 420 A1284
2AC2SOFTWARETRP A:43 , TRP A:112 , ALA A:138BINDING SITE FOR RESIDUE C8E A1285
3AC3SOFTWAREPHE A:36 , THR A:164 , LEU A:197 , LEU A:201 , PRO A:208 , CYS A:209 , THR A:210 , GLY A:237 , C8E A:1288BINDING SITE FOR RESIDUE C8E A1286
4AC4SOFTWAREALA A:12 , SER A:33 , TYR A:159 , VAL A:276BINDING SITE FOR RESIDUE C8E A1287
5AC5SOFTWAREILE A:10 , ILE A:193 , ASN A:246 , C8E A:1286BINDING SITE FOR RESIDUE C8E A1288
6AC6SOFTWAREALA A:30 , GLN A:51 , TYR A:159 , PHE A:161BINDING SITE FOR RESIDUE C8E A1289
7AC7SOFTWARELEU A:157BINDING SITE FOR RESIDUE C8E A1290

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WVP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WVP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WVP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WVP)

(-) Exons   (0, 0)

(no "Exon" information available for 2WVP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with OMPG_ECOLI | P76045 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:280
                                                                                                                                                                                                                                                                                                              301   
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294      |  -
           OMPG_ECOLI    25 NDWHFNIGAMYEIENVEGYGEDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSF---   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Porin_OmpG-2wvpA        01 A:4-280                                                                                                                                                                                                                                                   --- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeee.--------.eeeeeeeeeeee..eeeeeeeeeeee...---....eeeeeeeeeeeeee....eeeeeeeeeeeeeee........eeeeeeeeeeeeeeee....eeeeeeeeeeeee.hhhhhh...eeeeeeeeeeee.....eeeeeeeeeeee...........eeeeeeee.......eeeeeeeeeeeeee....-------.....eeeeeeeeee....eeeeeeeeeee..........eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wvp A   4 NDWHFNIGAMYEIENV--------GLAEPSVYFNAANGPWRIALAYYQEGPVDY---KRGTWFDRPELEVHYQFLENDDFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPCTRIGLDRWSNWD-------EGHDFNRVGLFYGYDFQNGLSVSLEYAFEWQDHDEGDSDKFHYAGVGVNYSFHHH 283
                                    13     |   -    |   33        43        53   |   |63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       | -     | 233       243       253       263       273       283
                                          19       28                           57  61                                                                                                                                                             221     229                                                      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WVP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WVP)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: MBB (97)

(-) Gene Ontology  (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (OMPG_ECOLI | P76045)
molecular function
    GO:0015481    maltose transporting porin activity    Catalysis of the transfer of maltose from one side of the membrane to the other. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the enzymatic breakdown of glycogen and starch. This transporter is a porin so enables the energy independent passage of substances, sized less than 1000 Da, across a membrane. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
    GO:0015478    oligosaccharide transporting porin activity    Catalysis of the transfer of oligosaccharide, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
    GO:0015288    porin activity    Catalysis of the transfer of substances, sized less than 1000 Da, from one side of the membrane to the other. The transmembrane portions of porins consist exclusively of beta-strands which form a beta-barrel. They are found in the outer membranes of Gram-negative bacteria, mitochondria, plastids and possibly acid-fast Gram-positive bacteria.
biological process
    GO:0034219    carbohydrate transmembrane transport    The process in which a carbohydrate is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0015768    maltose transport    The directed movement of maltose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the catabolism of glycogen and starch.
    GO:0015772    oligosaccharide transport    The directed movement of oligosaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligosaccharides are molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0045203    integral component of cell outer membrane    The component of the cell outer membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0046930    pore complex    Any small opening in a membrane that allows the passage of gases and/or liquids.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OMPG_ECOLI | P760452f1c 2iwv 2iww 2jqy 2x9k 4ctd

(-) Related Entries Specified in the PDB File

2f1c CRYSTAL STRUCTURE OF THE MONOMERIC PORIN OMPG
2iwv STRUCTURE OF THE MONOMERIC OUTER MEMBRANE PORIN OMPG IN THE OPEN AND CLOSED CONFORMATION
2iww STRUCTURE OF THE MONOMERIC OUTER MEMBRANE PORIN OMPG IN THE OPEN AND CLOSED CONFORMATION