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(-) Description

Title :  N-TERMINAL DOMAIN OF BC2L-C LECTIN FROM BURKHOLDERIA CENOCEPACIA
 
Authors :  O. Sulak, G. Cioci, M. Lahman, M. Delia, A. Varrot, A. Imberty, M. Wimmer
Date :  13 Aug 09  (Deposition) - 12 Jan 10  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.42
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Lung, Pathogen, Infection, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Sulak, G. Cioci, M. Lahman, M. Delia, A. Varrot, A. Imberty, M. Wimmerova
A Tnf-Like Trimeric Lectin Domain From Burkholderia Cenocepacia With Specificity For Fucosylated Human Histo-Blood Group Antigens
Structure V. 18 59 2010
PubMed-ID: 20152153  |  Reference-DOI: 10.1016/J.STR.2009.10.021

(-) Compounds

Molecule 1 - LECTIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET25
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: N-TERMINAL DOMAIN, RESIDUES 1-156
    Organism Scientific: BURKHOLDERIA CENOCEPACIA
    Organism Taxid: 216591
    Strain: J2315
    Synonym: BC2L-C N-TERMINAL DOMAIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1BR1Ligand/IonBROMIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
3SFU3Ligand/IonMETHYL 6-DEOXY-1-SELENO-ALPHA-L-GALACTOPYRANOSIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:83 , GLY A:84 , ARG A:85 , SER A:134 , HOH A:2194 , HOH A:2195 , THR C:74 , ARG C:111BINDING SITE FOR RESIDUE SFU A 200
2AC2SOFTWAREALA A:130BINDING SITE FOR RESIDUE BR A 300
3AC3SOFTWARETHR A:74 , ARG A:111 , THR B:14 , SER B:15 , GLU B:16 , TYR B:48 , THR B:83 , GLY B:84 , ARG B:85 , SER B:109 , HOH B:2170 , HOH B:2171BINDING SITE FOR RESIDUE SFU B 200
4AC4SOFTWARESER A:15 , VAL A:19 , THR B:74 , ARG B:111 , THR C:83 , GLY C:84 , ARG C:85 , HOH C:2107 , HOH C:2147BINDING SITE FOR RESIDUE SFU C 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WQ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WQ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 2WQ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:134
 aligned with B4EH86_BURCJ | B4EH86 from UniProtKB/TrEMBL  Length:272

    Alignment length:134
                                    11        21        31        41        51        61        71        81        91       101       111       121       131    
         B4EH86_BURCJ     2 PLLSASIVSAPVVTSETYVDIPGLYLDVAKAGIRDGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRMPFTLVATIDVGSGVTFVKGQWKSVRGSAMHIDSYASLSAIWGTAAPSS 135
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...................hhhhhh.....eeeeeee...eee.......eeeeee........................eeeeeee..hhh...eeeeee.....eee....eeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wq4 A   1 PLLSASIVSAPVVTSETYVDIPGLYLDVAKAGIRDGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRmPFTLVATIDVGSGVTFVKGQWKSVRGSAmHIDSYASLSAIWGTAAPSS 134
                                    10        20        30        40        50        60        70        80     |  90       100       110    |  120       130    
                                                                                                                86-MSE                      115-MSE               


Chain B from PDB  Type:PROTEIN  Length:131
 aligned with B4EH86_BURCJ | B4EH86 from UniProtKB/TrEMBL  Length:272

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
         B4EH86_BURCJ     2 PLLSASIVSAPVVTSETYVDIPGLYLDVAKAGIRDGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRMPFTLVATIDVGSGVTFVKGQWKSVRGSAMHIDSYASLSAIWGTAA 132
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..................ee..........eeeeeee...eee.......eeeee.........................eeeeeee.......eeeeeee.....eee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wq4 B   1 PLLSASIVSAPVVTSETYVDIPGLYLDVAKAGIRDGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRmPFTLVATIDVGSGVTFVKGQWKSVRGSAmHIDSYASLSAIWGTAA 131
                                    10        20        30        40        50        60        70        80     |  90       100       110    |  120       130 
                                                                                                                86-MSE                      115-MSE            


Chain C from PDB  Type:PROTEIN  Length:131
 aligned with B4EH86_BURCJ | B4EH86 from UniProtKB/TrEMBL  Length:272

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
         B4EH86_BURCJ     2 PLLSASIVSAPVVTSETYVDIPGLYLDVAKAGIRDGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRMPFTLVATIDVGSGVTFVKGQWKSVRGSAMHIDSYASLSAIWGTAA 132
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...................hhhhhh.....eeeeeee...eee.......eeeeee........................eeeeeee........eeeeee.....eee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wq4 C   1 PLLSASIVSAPVVTSETYVDIPGLYLDVAKAGIRDGKLQVILNVPTPYATGNNFPGIYFAIATNQGVVADGCFTYSSKVPESTGRmPFTLVATIDVGSGVTFVKGQWKSVRGSAmHIDSYASLSAIWGTAA 131
                                    10        20        30        40        50        60        70        80     |  90       100       110    |  120       130 
                                                                                                                86-MSE                      115-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WQ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WQ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WQ4)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2WQ4)

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 Related Entries

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UniProtKB/TrEMBL
        B4EH86_BURCJ | B4EH86: 2xr4

(-) Related Entries Specified in the PDB File

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