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(-) Description

Title :  SALMONELLA ENTERICA SADA 483-523 FUSED TO GCN4 ADAPTORS ( SADAK3B-V1, OUT-OF-REGISTER FUSION)
 
Authors :  M. D. Hartmann, O. Ridderbusch, A. N. Lupas, B. Hernandez Alvarez
Date :  09 Aug 09  (Deposition) - 03 Nov 09  (Release) - 03 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Membrane Protein, Ion Coordination, Hydrophobic Core, Trimeric Autotransporter Adhesin, Taa, Stutter, Stammer, Coiled Coil, Protein Export, Polar Core Residues (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Hartmann, O. Ridderbusch, K. Zeth, R. Albrecht, O. Testa, D. N. Woolfson, G. Sauer, S. Dunin-Horkawicz, A. N. Lupas, B. H. Alvarez
A Coiled-Coil Motif That Sequesters Ions To The Hydrophobic Core.
Proc. Natl. Acad. Sci. Usa V. 106 16950 2009
PubMed-ID: 19805097  |  Reference-DOI: 10.1073/PNAS.0907256106

(-) Compounds

Molecule 1 - TRIMERIC AUTOTRANSPORTER ADHESIN FRAGMENT
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 483-523 FUSED TO GCN4 ADAPTORS
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
    Other Details: N- AND C-TERMINAL OUT-OF-REGISTER FUSION TO GCN4 ADAPTORS

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1CL4Ligand/IonCHLORIDE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:488 , ASN B:488 , ASN C:488BINDING SITE FOR RESIDUE CL B1554
2AC2SOFTWAREASN A:495 , ASN B:495 , ASN C:495BINDING SITE FOR RESIDUE CL A1554
3AC3SOFTWAREASN A:502 , ASN B:502 , ASN C:502BINDING SITE FOR RESIDUE CL B1555
4AC4SOFTWAREASN A:509 , ASN B:509 , ASN C:509BINDING SITE FOR RESIDUE CL A1555

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WPR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2WPR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WPR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WPR)

(-) Exons   (0, 0)

(no "Exon" information available for 2WPR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:97
 aligned with SADA_SALTY | Q8ZL64 from UniProtKB/Swiss-Prot  Length:1461

    Alignment length:216
                                   403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603      
           SADA_SALTY   394 INQNTTDIAANTTSINQNTTDIATNTTNINSLSDSVTTLTDDALLWDAASGAFSAKHNGSDSKITNLAAGTLAADSTDAVNGSQLFDTNEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLTDDALLWDAASGAFSANHNGSASKITNLAAGTLAADSTDAVNGSQLFATNENVSQNTADITTNTNSINQNTTDIATNTTSINNLSD 609
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2wprA00 A:457-553                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh---hhhh----hhhh--------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-------------------------------------------------hhhhhhhhhhhhhhhhhh---hhhh----hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wpr A 457 IEDKIEEILSKIYHIEN---EIAR----IKKL--------------------------------------------------------IEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLMK-------------------------------------------------QIEDKIEEILSKIYHIEN---EIAR----IKKLIK 553
                                   466      |  -|  |   479 |       -         -         -         -         -       483       493       503       513       523 |       -         -         -         -         - |     534        |-  |  |   -|     
                                          473 474  |  478  |                                                      482                                        525                                               526              543 544  |  548     
                                                 477     481                                                                                                                                                                           547          


Chain B from PDB  Type:PROTEIN  Length:97
 aligned with SADA_SALTY | Q8ZL64 from UniProtKB/Swiss-Prot  Length:1461

    Alignment length:216
                                   403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603      
           SADA_SALTY   394 INQNTTDIAANTTSINQNTTDIATNTTNINSLSDSVTTLTDDALLWDAASGAFSAKHNGSDSKITNLAAGTLAADSTDAVNGSQLFDTNEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLTDDALLWDAASGAFSANHNGSASKITNLAAGTLAADSTDAVNGSQLFATNENVSQNTADITTNTNSINQNTTDIATNTTSINNLSD 609
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2wprB00 B:457-553                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh---hhhh----hhhh--------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-------------------------------------------------hhhhhhhhhhhhhhhhhh---hhhh----hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wpr B 457 IEDKIEEILSKIYHIEN---EIAR----IKKL--------------------------------------------------------IEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLMK-------------------------------------------------QIEDKIEEILSKIYHIEN---EIAR----IKKLIK 553
                                   466      |  -|  |   479 |       -         -         -         -         -       483       493       503       513       523 |       -         -         -         -         - |     534        |-  |  |   -|     
                                          473 474  |  478  |                                                      482                                        525                                               526              543 544  |  548     
                                                 477     481                                                                                                                                                                           547          


Chain C from PDB  Type:PROTEIN  Length:97
 aligned with SADA_SALTY | Q8ZL64 from UniProtKB/Swiss-Prot  Length:1461

    Alignment length:216
                                   403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603      
           SADA_SALTY   394 INQNTTDIAANTTSINQNTTDIATNTTNINSLSDSVTTLTDDALLWDAASGAFSAKHNGSDSKITNLAAGTLAADSTDAVNGSQLFDTNEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLTDDALLWDAASGAFSANHNGSASKITNLAAGTLAADSTDAVNGSQLFATNENVSQNTADITTNTNSINQNTTDIATNTTSINNLSD 609
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2wprC00 C:457-553                                                                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh---hhhh----hhhh--------------------------------------------------------hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh-------------------------------------------------hhhhhhhhhhhhhhhhhh---hhhh----hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2wpr C 457 IEDKIEEILSKIYHIEN---EIAR----IKKL--------------------------------------------------------IEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLMK-------------------------------------------------QIEDKIEEILSKIYHIEN---EIAR----IKKLIK 553
                                   466      |  -|  |   479 |       -         -         -         -         -       483       493       503       513       523 |       -         -         -         -         - |     534        |-  |  |   -|     
                                          473 474  |  478  |                                                      482                                        525                                               526              543 544  |  548     
                                                 477     481                                                                                                                                                                           547
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WPR)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WPR)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (SADA_SALTY | Q8ZL64)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SADA_SALTY | Q8ZL64: 2wpq 2wps 2yny 2ynz 2yo0 2yo1 2yo2 2yo3 3zmf

(-) Related Entries Specified in the PDB File

2wpq SALMONELLA ENTERICA SADA 479-519 FUSED TO GCN4 ADAPTORS (SADAK3, IN-REGISTER FUSION)
2wps SALMONELLA ENTERICA SADA 483-523 FUSED TO GCN4 ADAPTORS (SADAK3B-V2, OUT-OF-REGISTER FUSION)
2wpy GCN4 LEUCINE ZIPPER MUTANT WITH ONE VXXNXXX MOTIF COORDINATING CHLORIDE
2wpz GCN4 LEUCINE ZIPPER MUTANT WITH TWO VXXNXXX MOTIFS COORDINATING CHLORIDE
2wq0 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING CHLORIDE
2wq1 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING BROMIDE
2wq2 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING IODIDE
2wq3 GCN4 LEUCINE ZIPPER MUTANT WITH THREE IXXNTXX MOTIFS COORDINATING CHLORIDE AND NITRATE