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(-) Description

Title :  CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2
 
Authors :  A. K. Mackenzie, K. Valegard, A. Iqbal, M. E. C. Caines, N. J. Kershaw, S. E. Jensen, C. J. Schofield, I. Andersson
Date :  27 Jul 09  (Deposition) - 08 Dec 09  (Release) - 09 Feb 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A
Keywords :  Peptide Binding Protein, Solute-Binding Protein, Clavulanic Acid Biosynthesis, Oligopeptide Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Mackenzie, K. Valegard, A. Iqbal, M. E. C. Caines, N. J. Kershaw, S. E. Jensen, C. J. Schofield, I. Andersson
Crystal Structures Of An Oligopeptide-Binding Protein From The Biosynthetic Pathway Of The Beta- Lactamase Inhibitor Clavulanic Acid.
J. Mol. Biol. V. 396 332 2010
PubMed-ID: 19941870  |  Reference-DOI: 10.1016/J.JMB.2009.11.045

(-) Compounds

Molecule 1 - CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET 28A
    Organism Scientific: STREPTOMYCES CLAVULIGERUS
    Organism Taxid: 1901
    Synonym: ORF15

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:57 , TYR A:70 , GLN A:189 , ASP A:456 , PHE A:457 , PRO A:458 , ALA A:547 , PHE A:548 , HOH A:2392BINDING SITE FOR RESIDUE GOL A1561
2AC2SOFTWARETHR A:138 , TYR A:139 , PRO A:142 , GLN A:472 , LYS A:474 , HOH A:2048 , HOH A:2393BINDING SITE FOR RESIDUE GOL A1562
3AC3SOFTWAREVAL A:54 , TRP A:453 , GLY A:454 , ASP A:456 , HOH A:2394BINDING SITE FOR RESIDUE GOL A1563

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WOL)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro A:314 -Pro A:315
2Gly A:340 -Pro A:341

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WOL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WOL)

(-) Exons   (0, 0)

(no "Exon" information available for 2WOL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:553
 aligned with Q8KRB4_STRCL | Q8KRB4 from UniProtKB/TrEMBL  Length:562

    Alignment length:553
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557   
         Q8KRB4_STRCL     8 PAPTTAGAGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSDGGRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVFRLTRPFSDFDHLMAQPCAAPVPRRSDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRVELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPELDDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLAE 560
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh......................eeee..............hhhhhhhhhhhh...ee............ee........ee....eeeee.............hhhhhhhhhhhhh..........hhhhhhh..................eeeee..eeeee......hhhhhhhhhhhh..hhhhh..............eeeeeee...eeeeee....hhhhh........eeeee...hhhhhhhhhhh....ee......hhhhhhhhhhhhhhhh.ee..eeeeeeeee.........hhhhhhhhhhh.hhhhhhhhh...................................hhhhhhhhhhhh......eeeeeee..hhhhhhhhhhhhhhh...eeeeeee...........hhhhhhhh....eeeee..........hhhhhh.................hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh.eeeeeeee..ee.................hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wol A   8 PAPTTAGAGWDAGVGALVNPSRRRGGTLRLVSSADVDSLDPARTYYVWVWLLQRLLNRTLMAYPTDPGPAGLVPAPDLAEGPGEVSDGGRTWTYRLRRGLRYDDGTPITSDDVRHAVQRVFAQDVLPGGPTYLIPLLDDPERPYPGPYRTDEPLRSVLTPDEHTIVFRLTRPFSDFDHLMAQPCAAPVPRRSDTGADYGRDPRSSGPYRVARHEPDTLLHLERNPHWDRATDPIRPALPDRVELTIGLDVDVLDARLIAGEFDINLEGRGLQHAAQRRATADEVLRSHTDNPRTSFLHFVAMQPHIPPFDNVHVRRAVQYAADKILLQDARGGPVNGGDLTTALFPPTLPAHQDLDLYPTGPDLRGDLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKELDVATYFSLGAGHPETVREHGLGLLVTDWGADFPTEYGFLAPLVDGRQIKRNGGNWNLPELDDPEVNALIDETLHTTDPAARAELWRAVERRVMEHAVLLPLVHDKTLHFRNPWVTNVYVHPAFGLYDIQAMGLAE 560
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WOL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WOL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WOL)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8KRB4_STRCL | Q8KRB4)
biological process
    GO:0033050    clavulanic acid biosynthetic process    The chemical reactions and pathways resulting in the formation of clavulanic acid, (2R,3Z,5R)-3-(2-hydroxyethylidene)-7-oxo-4-oxa-1-azabicyclo[3.2.0]heptane-2-carboxylic acid.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
cellular component
    GO:0043190    ATP-binding cassette (ABC) transporter complex    A complex for the transport of metabolites into and out of the cell, typically comprised of four domains; two membrane-associated domains and two ATP-binding domains at the intracellular face of the membrane, that form a central pore through the plasma membrane. Each of the four core domains may be encoded as a separate polypeptide or the domains can be fused in any one of a number of ways into multidomain polypeptides. In Bacteria and Archaebacteria, ABC transporters also include substrate binding proteins to bind substrate external to the cytoplasm and deliver it to the transporter.

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 Related Entries

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UniProtKB/TrEMBL
        Q8KRB4_STRCL | Q8KRB4: 2wok 2wop

(-) Related Entries Specified in the PDB File

2wok CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE PERMEASE-LIKE BINDING PROTEIN 2 COMPLEXED WITH BRADYKININ
2wop CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE PERMEASE-LIKE BINDING PROTEIN 2 COMPLEXED WITH ARGININE