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(-) Description

Title :  CRYSTAL STRUCTURE OF EUKARYOTIC INITIATION FACTOR 4E FROM PISUM SATIVUM
 
Authors :  J. A. Ashby, C. E. M. Stevenson, A. J. Maule, D. M. Lawson
Date :  30 Jun 09  (Deposition) - 01 Sep 10  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Biosynthetic Protein, Initiation Factor, Protein Biosynthesis, Eif4E, Sbm1 Gene, Rna-Binding, Pisum Sativum (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Ashby, C. E. Stevenson, G. E. Jarvis, D. M. Lawson, A. J. Maule
Structure-Based Mutational Analysis Of Eif4E In Relation To Sbm1 Resistance To Pea Seed-Borne Mosaic Virus In Pea.
Plos One V. 6 E873 2011
PubMed-ID: 21283665  |  Reference-DOI: 10.1371/JOURNAL.PONE.0015873
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24APLUS
    Expression System Strain: ROSETTA-2(DE3)
    Expression System Taxid: 562
    Expression System Variant: PLYSS
    Fragment: N-TERMINALLY TRUNCATED FORM, RESIDUES 52-228
    Organism Common: GARDEN PEA
    Organism Scientific: PISUM SATIVUM
    Organism Taxid: 3888
    Other Details: CONTAINS RESIDUES 52-228 OF THE NATIVE SEQUENCE PLUS AN ADDITIONAL N-TERMINAL METHIONINE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1MGP8Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 7 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:75 , TRP A:121 , GLU A:122 , ARG A:171 , LYS A:176 , ARG A:220 , HOH A:2125BINDING SITE FOR RESIDUE MGP A 500
2AC2SOFTWARETRP B:75 , LYS B:120 , TRP B:121 , GLU B:122 , LYS B:176 , HOH B:2110BINDING SITE FOR RESIDUE MGP B 500
3AC3SOFTWARETRP C:75 , LYS C:120 , TRP C:121 , GLU C:122 , ARG C:171 , LYS C:176 , HOH C:2094 , HOH C:2095BINDING SITE FOR RESIDUE MGP C 500
4AC4SOFTWARETRP D:75 , LYS D:120 , TRP D:121 , GLU D:122 , ARG D:171 , LYS D:176 , HOH D:2122BINDING SITE FOR RESIDUE MGP D 500
5AC5SOFTWARETRP E:75 , LYS E:120 , TRP E:121 , GLU E:122 , ARG E:171 , LYS E:176 , HOH E:2093BINDING SITE FOR RESIDUE MGP E 500
6AC6SOFTWARELYS A:116 , TRP F:75 , TRP F:121 , GLU F:122 , ARG F:171 , LYS F:176 , HOH F:2066BINDING SITE FOR RESIDUE MGP F 500
7AC7SOFTWARETRP G:75 , LYS G:120 , TRP G:121 , GLU G:122 , ARG G:171 , LYS G:176 , HOH G:2088BINDING SITE FOR RESIDUE MGP G 500
8AC8SOFTWARELYS H:69 , TRP H:75 , LYS H:120 , TRP H:121 , GLU H:122 , ARG H:171 , LYS H:176 , HOH H:2032BINDING SITE FOR RESIDUE MGP H 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WMC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1His D:100 -Pro D:101

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WMC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WMC)

(-) Exons   (0, 0)

(no "Exon" information available for 2WMC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
 aligned with Q6TEC4_PEA | Q6TEC4 from UniProtKB/TrEMBL  Length:228

    Alignment length:177
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
           Q6TEC4_PEA    52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
               SCOP domains d2wmca_ A: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeehhhhhh.........eeeeeeeehhhhhhhhh...hhhhh....eeeeee...............eeeeeeee...hhhhhhhhhhhhhh....hhh.eeeeeeee...eeeeeeee....hhhhhhhhhhhhhhhhh....eeeeehhhhh---......eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmc A  52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDAR---RNAKNKYVV 228
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211    |  221       
                                                                                                                                                                                              216 220        


Chain B from PDB  Type:PROTEIN  Length:159
 aligned with Q6TEC4_PEA | Q6TEC4 from UniProtKB/TrEMBL  Length:228

    Alignment length:177
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
           Q6TEC4_PEA    52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
               SCOP domains d2wmcb_ B: aut        omated matches                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.--------......eeeeeeeehhhhhhhhhhhh.-------.eeeeee...............eeeeeee....hhhhhhhhhhhhhh....hhh.eeeeeeee....eeeeeee....hhhhhhhhhhhhhhhhh....eeeeehhhhh.---...eeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmc B  52 PHLLENSWTFWFDT--------AWGSSMRPIYTFSTVEEFWSIYNNIHH-------ADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARK---NAKNKYVV 228
                                    61   |     -  |     81        91        |-      |111       121       131       141       151       161       171       181       191       201       211     | 221       
                                        65       74                       100     108                                                                                                          217 221       


Chain C from PDB  Type:PROTEIN  Length:172
 aligned with Q6TEC4_PEA | Q6TEC4 from UniProtKB/TrEMBL  Length:228

    Alignment length:177
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
           Q6TEC4_PEA    52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
               SCOP domains d2wmcc_ C: automated  matches                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeehhhhhh.-.......eeeeeeeehhhhhhhhhhh.hhhhh....eeeeee...............eeeeeee....hhhhhhhhhhhhhh....hhh.eeeeeeee....eeeeeee....hhhhhhhhhhhhhhhhh....eeeeehhhhh----.....eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmc C  52 PHLLENSWTFWFDTPAAKSK-AAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDAR----NAKNKYVV 228
                                    61        71 |      81        91       101       111       121       131       141       151       161       171       181       191       201       211    |  221       
                                              71 |                                                                                                                                            216  221       
                                                73                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:163
 aligned with Q6TEC4_PEA | Q6TEC4 from UniProtKB/TrEMBL  Length:228

    Alignment length:177
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
           Q6TEC4_PEA    52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
               SCOP domains d2wmcd_ D: auto       mated matches                                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee..-------......eeeeeeeehhhhhhhhhhhhh....---.eeeeee...............eeeeeeee...hhhhhhhhhhhhhh....hhh.eeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhh....eeeeehhhhhh----....eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmc D  52 PHLLENSWTFWFDTP-------AWGSSMRPIYTFSTVEEFWSIYNNIHHPGKL---ADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARK----AKNKYVV 228
                                    61    |    -  |     81        91       101  |   |111       121       131       141       151       161       171       181       191       201       211     |   -|      
                                         66      74                           104 108                                                                                                          217  222      


Chain E from PDB  Type:PROTEIN  Length:167
 aligned with Q6TEC4_PEA | Q6TEC4 from UniProtKB/TrEMBL  Length:228

    Alignment length:177
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
           Q6TEC4_PEA    52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
               SCOP domains d2wmce_ E: autom      ated matches                                                                                                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...------......eeeeeeeehhhhhhhhh...hhhhh....eeeeee........hhhhhh.eeeeeeee...hhhhhhhhhhhhhh....hhh.eeeeeeee...eeeeeeee....hhhhhhhhhhhhhhhhh....eeeeehhhhhh----....eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmc E  52 PHLLENSWTFWFDTPA------AWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARK----AKNKYVV 228
                                    61     |   -  |     81        91       101       111       121       131       141       151       161       171       181       191       201       211     |   -|      
                                          67     74                                                                                                                                            217  222      


Chain F from PDB  Type:PROTEIN  Length:162
 aligned with Q6TEC4_PEA | Q6TEC4 from UniProtKB/TrEMBL  Length:228

    Alignment length:177
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
           Q6TEC4_PEA    52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
               SCOP domains d2wmcf_ F: aut        omated matches                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.--------......eeeeeeeehhhhhhhhh...hhhhh....eeeeee...............eeeeeee....hhhhhhhhhhhhhh....hhh.eeeeeeee....eeeeeee....hhhhhhhhhhhhhhhhh....eeeee...-------....eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmc F  52 PHLLENSWTFWFDT--------AWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDD-------AKNKYVV 228
                                    61   |     -  |     81        91       101       111       121       131       141       151       161       171       181       191       201       211  |      -|      
                                        65       74                                                                                                                                         214     222      


Chain G from PDB  Type:PROTEIN  Length:169
 aligned with Q6TEC4_PEA | Q6TEC4 from UniProtKB/TrEMBL  Length:228

    Alignment length:177
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
           Q6TEC4_PEA    52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
               SCOP domains d2wmcg_ G: automated  matches                                                                                                                                                     SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.......-.......eeeeeeeehhhhhhhhh...........eeeeeee...............eeeeeeee...hhhhhhhhhhhhhh....hhh.eeeeeeee...eeeeeeee....hhhhhhhhhhhhhhhhh....eeeee...-------....eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmc G  52 PHLLENSWTFWFDTPAAKSK-AAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDD-------AKNKYVV 228
                                    61        71 |      81        91       101       111       121       131       141       151       161       171       181       191       201       211  |      -|      
                                              71 |                                                                                                                                          214     222      
                                                73                                                                                                                                                           


Chain H from PDB  Type:PROTEIN  Length:171
 aligned with Q6TEC4_PEA | Q6TEC4 from UniProtKB/TrEMBL  Length:228

    Alignment length:177
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       
           Q6TEC4_PEA    52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV 228
               SCOP domains d2wmch_ H: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --IF4E-2wmcH01 H:54-214                                                                                                                                            -------------- Pfam domains (1)
           Pfam domains (2) --IF4E-2wmcH02 H:54-214                                                                                                                                            -------------- Pfam domains (2)
           Pfam domains (3) --IF4E-2wmcH03 H:54-214                                                                                                                                            -------------- Pfam domains (3)
           Pfam domains (4) --IF4E-2wmcH04 H:54-214                                                                                                                                            -------------- Pfam domains (4)
           Pfam domains (5) --IF4E-2wmcH05 H:54-214                                                                                                                                            -------------- Pfam domains (5)
           Pfam domains (6) --IF4E-2wmcH06 H:54-214                                                                                                                                            -------------- Pfam domains (6)
           Pfam domains (7) --IF4E-2wmcH07 H:54-214                                                                                                                                            -------------- Pfam domains (7)
           Pfam domains (8) --IF4E-2wmcH08 H:54-214                                                                                                                                            -------------- Pfam domains (8)
         Sec.struct. author ..eeeeeeeeeeehhhhhh.........eeeeeeeehhhhhhhhh...hhhhh....eeeeee...............eeeeeeee...hhhhhhhhhhhhhh....hhh.eeeeeeee...eeeeeeee....hhhhhhhhhhhhhhhhh....eeeee....------....eee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wmc H  52 PHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPKWEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQVSIGKQWKEFLDYNETMGFIFHDDA------AKNKYVV 228
                                    61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211   |     -|      
                                                                                                                                                                                             215    222
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WMC)

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: IF4E] (10)
(-)
Family: IF4E (10)
(-)
Pisum sativum (Garden pea) (1)
1aIF4E-2wmcH01H:54-214
1bIF4E-2wmcH02H:54-214
1cIF4E-2wmcH03H:54-214
1dIF4E-2wmcH04H:54-214
1eIF4E-2wmcH05H:54-214
1fIF4E-2wmcH06H:54-214
1gIF4E-2wmcH07H:54-214
1hIF4E-2wmcH08H:54-214

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q6TEC4_PEA | Q6TEC4)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003743    translation initiation factor activity    Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006413    translational initiation    The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

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Asymmetric Unit
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