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(-) Description

Title :  PUTATIVE THIOSULFATE SULFURTRANSFERASE YNJE
 
Authors :  J. P. Declercq, A. Smeets, M. Depuydt, J. F. Collet
Date :  26 Jun 09  (Deposition) - 01 Sep 10  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Rhodanese Domains (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. P. Declercq, A. Smeets, M. Depuydt, J. F. Collet
Structural Analysis Of Ynje, A Putative Thiosulfate Sulfurtransferase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE THIOSULFATE SULFURTRANSFERASE YNJE
    Chains: A
    EC Number: 2.8.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector: PET3A
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: YNJE, A PUTATIVE THIOSULFATE SULFURTRANSFERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:155 , GLU A:178 , TRP A:183 , LYS A:265 , TYR A:308 , THR A:367 , TRP A:369 , HOH A:2186 , HOH A:2361 , HOH A:2362 , HOH A:2363BINDING SITE FOR RESIDUE EPE A1412
2AC2SOFTWARELYS A:8 , GLN A:14 , TRP A:320 , TRP A:353 , HOH A:2014 , HOH A:2365BINDING SITE FOR RESIDUE EPE A1413

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WLX)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Glu A:180 -Pro A:181
2Ile A:266 -Pro A:267

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WLX)

(-) PROSITE Motifs  (3, 5)

Asymmetric/Biological Unit (3, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RHODANESE_3PS50206 Rhodanese domain profile.YNJE_ECOLI36-138
164-270
304-425		  3A:16-118
A:144-250
A:284-405
2RHODANESE_1PS00380 Rhodanese signature 1.YNJE_ECOLI181-192  1A:161-172
3RHODANESE_2PS00683 Rhodanese C-terminal signature.YNJE_ECOLI406-416  1A:386-396

(-) Exons   (0, 0)

(no "Exon" information available for 2WLX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:407
 aligned with YNJE_ECOLI | P78067 from UniProtKB/Swiss-Prot  Length:435

    Alignment length:407
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       
           YNJE_ECOLI    25 ELAKPLTLDQLQQQNGKAIDTRPSAFYNGWPQTLNGPSGHELAALNLSASWLDKMSTEQLNAWIKQHNLKTDAPVALYGNDKDVDAVKTRLQKAGLTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGP 431
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Rhodanese-2wlxA01 A:275-399                                                                                                  ------------ Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Rhodanese-2wlxA02 A:275-399                                                                                                  ------------ Pfam domains (2)
         Sec.struct. author ......hhhhhhhh..eeee..hhhhhhh...............ee.hhhhhhhhhhhhhhhhhhhh.......eeee.hhhhhhhhhhhhhhh....eee......hhhhh....hhh.eehhhhhhhhhh...........eeeeeee....hhhhhh.....eeee....ee....ee.hhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhh...eeee..hhhhhhhhh.......................hhh.eehhhhhhh......eeeee..hhhhhhh............ee...ee.........hhhh........hhhhhhhhhhh.......eeeee...hhhhhhhhhhhhhh....eeee.hhhhhhh......ee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------RHODANESE_3  PDB: A:16-118 UniProt: 36-138                                                             -------------------------RHODANESE_3  PDB: A:144-250 UniProt: 164-270                                                               ---------------------------------RHODANESE_3  PDB: A:284-405 UniProt: 304-425                                                                              ------ PROSITE (1)
                PROSITE (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RHODANESE_2--------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2wlx A   5 ELAKPLTLDQLQQQNGKAIDTRPSAFYNGWPQTLNGPSGHELAALNLSASWLDKMSTEQLNAWIKQHNLKTDAPVALYGNDKDVDAVKTRLQKAGLTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYcGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGP 411
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364|      374       384       394       404       
                                                                                                                                                                                                                                                                                                                                                                                                  365-CSD
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2WLX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WLX)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Rhodanese] (33)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (YNJE_ECOLI | P78067)
molecular function
    GO:0016783    sulfurtransferase activity    Catalysis of the transfer of sulfur atoms from one compound (donor) to another (acceptor).
    GO:0004792    thiosulfate sulfurtransferase activity    Catalysis of the reaction: hydrogen cyanide + thiosulfate = H(+) + sulfite + thiocyanate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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  2wlx
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  YNJE_ECOLI | P78067
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  2.8.1.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        YNJE_ECOLI | P78067: 2wlr 3ipo 3ipp

(-) Related Entries Specified in the PDB File

2wlr PUTATIVE THIOSULFATE SULFURTRANSFERASE YNJE