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(-) Description

Title :  STRUCTURE OF THE FUNGAL TYPE I FAS PPT DOMAIN
 
Authors :  P. Johansson, B. Mulincacci, C. Koestler, M. Grininger
Date :  15 Feb 09  (Deposition) - 25 Aug 09  (Release) - 25 Aug 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Coa, Fas, Ppt, Nad, Nadp, Transferase, Phosphoprotein, Oxidoreductase, Lipid Synthesis, Phosphopantetheine Transferase, Phosphopantetheine, Multifunctional Enzyme, Fatty Acid Biosynthesis, Phosphopantetheinylation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Johansson, B. Mulinacci, C. Koestler, R. Vollrath, D. Oesterhelt, M. Grininger
Multimeric Options For The Auto-Activation Of The Saccharomyces Cerevisiae Fas Type I Megasynthase.
Structure V. 17 1063 2009
PubMed-ID: 19679086  |  Reference-DOI: 10.1016/J.STR.2009.06.014

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE
    ChainsA, D, E
    EC Number2.7.8.7, 2.3.1.41
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantGOLD
    Expression System VectorPET-22B
    FragmentPHOSPHOPANTETHEINE TRANSFERASE DOMAIN, RESIDUES 1766-1887
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    SynonymFAS PPT, BETA-KETOACYL REDUCTASE, BETA-KETOACYL SYNTHASE, FATTY ACID SYNTHASE SUBUNIT ALPHA
 
Molecule 2 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE
    ChainsB, C, F
    EC Number2.7.8.7, 2.3.1.41
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System VariantGOLD
    Expression System VectorPET-22B
    FragmentPHOSPHOPANTETHEINE TRANSFERASE DOMAIN, RESIDUES 1766-1887
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid4932
    SynonymFAS PPT, BETA-KETOACYL REDUCTASE, BETA-KETOACYL SYNTHASE, FATTY ACID SYNTHASE SUBUNIT ALPHA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit ABCDEF
Biological Unit 1 (1x)ABC   
Biological Unit 2 (1x)   DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2WAS)

(-) Sites  (0, 0)

(no "Site" information available for 2WAS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2WAS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly B:1830 -Gly B:1831

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2WAS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2WAS)

(-) Exons   (1, 6)

Asymmetric Unit (1, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YPL231W1YPL231W.1XVI:108652-1143155664FAS2_YEAST1-188718876A:1767-1886 (gaps)
B:1767-1886 (gaps)
C:1768-1886 (gaps)
D:1767-1885 (gaps)
E:1767-1886 (gaps)
F:1768-1886 (gaps)
120
120
119
119
120
119

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:113
 aligned with FAS2_YEAST | P19097 from UniProtKB/Swiss-Prot  Length:1887

    Alignment length:120
                                  1776      1786      1796      1806      1816      1826      1836      1846      1856      1866      1876      1886
          FAS2_YEAST   1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
               SCOP domains d2wasa_ A: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.hhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.-------....eeeeee..eeeeeeehhhhhhhhhh....eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.1  PDB: A:1767-1886 (gaps) UniProt: 1-1887 [INCOMPLETE]                                                           Transcript 1
                2was A 1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGV-------ALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
                                  1776      1786      1796      1806      1816        |-      1836      1846      1856      1866      1876      1886
                                                                                   1825    1833                                                     

Chain B from PDB  Type:PROTEIN  Length:118
 aligned with FAS2_YEAST | P19097 from UniProtKB/Swiss-Prot  Length:1887

    Alignment length:120
                                  1776      1786      1796      1806      1816      1826      1836      1846      1856      1866      1876      1886
          FAS2_YEAST   1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
               SCOP domains d2wasb_ B: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.hhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh............eeee..--...eeeehhhhhhhhhh....eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.1  PDB: B:1767-1886 (gaps) UniProt: 1-1887 [INCOMPLETE]                                                           Transcript 1
                2was B 1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAALKDIEIVRT--NAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
                                  1776      1786      1796      1806      1816      1826      1836     |1846      1856      1866      1876      1886
                                                                                                    1842  |                                         
                                                                                                       1845                                         

Chain C from PDB  Type:PROTEIN  Length:111
 aligned with FAS2_YEAST | P19097 from UniProtKB/Swiss-Prot  Length:1887

    Alignment length:119
                                  1777      1787      1797      1807      1817      1827      1837      1847      1857      1867      1877         
          FAS2_YEAST   1768 GVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
               SCOP domains d2wasc_ C: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.--------...eeee.......eeeehhhhhhhhhh....eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: C:1768-1886 (gaps) UniProt: 1-1887 [INCOMPLETE]                                                          Transcript 1
                2was C 1768 GVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGV--------LKDIEIVRTNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
                                  1777      1787      1797      1807      1817       | -      1837      1847      1857      1867      1877         
                                                                                  1825     1834                                                    

Chain D from PDB  Type:PROTEIN  Length:107
 aligned with FAS2_YEAST | P19097 from UniProtKB/Swiss-Prot  Length:1887

    Alignment length:119
                                  1776      1786      1796      1806      1816      1826      1836      1846      1856      1866      1876         
          FAS2_YEAST   1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVST 1885
               SCOP domains d2wasd_ D: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee.hhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh--------.....eeee.----..eeeehhhhhhhhhh....eeeeeeee...eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: D:1767-1885 (gaps) UniProt: 1-1887 [INCOMPLETE]                                                          Transcript 1
                2was D 1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSL--------AALKDIEIVR----APAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVST 1885
                                  1776      1786      1796      1806      1816      |  -     |1836    | 1846      1856      1866      1876         
                                                                                 1823     1832     1841 1846                                       

Chain E from PDB  Type:PROTEIN  Length:106
 aligned with FAS2_YEAST | P19097 from UniProtKB/Swiss-Prot  Length:1887

    Alignment length:120
                                  1776      1786      1796      1806      1816      1826      1836      1846      1856      1866      1876      1886
          FAS2_YEAST   1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
               SCOP domains d2wase_ E: automated matches                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.hhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh----------...eeee.----..eeeehhhhhhhhhh....eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.1  PDB: E:1767-1886 (gaps) UniProt: 1-1887 [INCOMPLETE]                                                           Transcript 1
                2was E 1767 GGVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSL----------LKDIEIVR----APAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
                                  1776      1786      1796      1806      1816      |  -      1836    | 1846      1856      1866      1876      1886
                                                                                 1823       1834   1841 1846                                        

Chain F from PDB  Type:PROTEIN  Length:106
 aligned with FAS2_YEAST | P19097 from UniProtKB/Swiss-Prot  Length:1887

    Alignment length:119
                                  1777      1787      1797      1807      1817      1827      1837      1847      1857      1867      1877         
          FAS2_YEAST   1768 GVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSLGVKSLGGGAALKDIEIVRVNKNAPAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
               SCOP domains d2wasf_ F: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhh...hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh----------...eeeee.---.eeeeehhhhhhhhhh....eeeeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: F:1768-1886 (gaps) UniProt: 1-1887 [INCOMPLETE]                                                          Transcript 1
                2was F 1768 GVGVDVELITSINVENDTFIERNFTPQEIEYCSAQPSVQSSFAGTWSAKEAVFKSL----------LKDIEIVRT---APAVELHGNAKKAAEEAGVTDVKVSISHDDLQAVAVAVSTK 1886
                                  1777      1787      1797      1807      1817     |   -      1837    | 1847      1857      1867      1877         
                                                                                1823       1834    1842   |                                        
                                                                                                       1846                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2WAS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2WAS)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (FAS2_YEAST | P19097)
molecular function
    GO:0004316    3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity    Catalysis of the reaction: (3R)-3-hydroxyacyl-[acyl-carrier protein] + NADP+ = 3-oxoacyl-[acyl-carrier protein] + NADPH + H+.
    GO:0004315    3-oxoacyl-[acyl-carrier-protein] synthase activity    Catalysis of the reaction: acyl-[acyl-carrier protein] + malonyl-[acyl-carrier protein] = 3-oxoacyl-[acyl-carrier protein] + CO2 + [acyl-carrier protein].
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004312    fatty acid synthase activity    Catalysis of the reaction: acetyl-CoA + n malonyl-CoA + 2n NADPH + 2n H+ = long-chain fatty acid + n+1 CoA + n CO2 + 2n NADP+.
    GO:0004321    fatty-acyl-CoA synthase activity    Catalysis of the reaction: acetyl-CoA + n malonyl-CoA + 2n NADH + 2n NADPH + 4n H+ = a long-chain acyl-CoA + n CoA + n CO2 + 2n NAD+ + 2n NADP+.
    GO:0008897    holo-[acyl-carrier-protein] synthase activity    Catalysis of the reaction: CoA + substrate-serine = adenosine 3',5'-bisphosphate + substrate-serine-4'-phosphopantetheine. The transfer of the 4'-phosphopantetheine (Ppant) co-factor from coenzyme A to the hydroxyl side chain of the serine residue of acyl- or peptidyl-carrier protein (ACP or PCP) to convert them from the apo to the holo form.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
    GO:0006631    fatty acid metabolic process    The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0042759    long-chain fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of long-chain fatty acids, any fatty acid with a chain length between C13 and C22.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005835    fatty acid synthase complex    A multienzyme complex that catalyses the synthesis of fatty acids from acetyl CoA.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FAS2_YEAST | P190972ml8 2pff 2uv8 2vkz 2wat 3hmj

(-) Related Entries Specified in the PDB File

2uv8 CRYSTAL STRUCTURE OF YEAST FATTY ACID SYNTHASE WITH STALLED ACYL CARRIER PROTEIN AT 3.1 ANGSTROM RESOLUTION
2vkz STRUCTURE OF THE CERULENIN-INHIBITED FUNGAL FATTY ACID SYNTHASE TYPE I MULTIENZYME COMPLEX
2wat STRUCTURE OF THE FUNGAL TYPE I FAS PPT DOMAIN IN COMPLEX WITH COA