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(-) Description

Title :  STRUCTURE OF THE VESICULAR STOMATITIS VIRUS MATRIX PROTEIN
 
Authors :  S. C. Graham, R. Assenberg, O. Delmas, A. Verma, A. Gholami, C. Talbi, R. J. Owens, D. I. Stuart, J. M. Grimes, H. Bourhy
Date :  03 Nov 08  (Deposition) - 13 Jan 09  (Release) - 13 Jan 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym./Biol. Unit :  A
Keywords :  Viral Assembly, Viral Morphogenesis, Vsv, Polymer, Viral Protein, Matrix Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. C. Graham, R. Assenberg, O. Delmas, A. Verma, A. Gholami, C. Talbi, R. J. Owens, D. I. Stuart, J. M. Grimes, H. Bourhy
Rhabdovirus Matrix Protein Structures Reveal A Novel Mode Of Self-Association.
Plos Pathog. V. 4 251 2008
PubMed-ID: 19112510  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1000251

(-) Compounds

Molecule 1 - MATRIX PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPOPINS
    Expression System StrainROSETTA PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificVESICULAR STOMATITIS VIRUS
    Organism Taxid11276
    StrainNEW JERSEY
    SynonymVESICULAR STOMATITS VIRUS MATRIX PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2W2R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2W2R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2W2R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2W2R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2W2R)

(-) Exons   (0, 0)

(no "Exon" information available for 2W2R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with MATRX_VSNJO | P08325 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:189
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220         
          MATRX_VSNJO    41 LSNDFFGMEDMDLYDKDSLRYEKFRFMLKMTVRSNKPFRSYDDVTAAVSQWDNSYIGMVGKRPFYKIIAVIGSSHLQATPAVLADLNQPEYYATLTGRCFLPHRLGLIPPMFNVQETFRKPFNIGLYKGTLDFTFTVSDDESNEKVPHVWDYMNPKYQSQIQQEGLKFGLILSKKATGTWVLDQLSPFK 229
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains Vesiculo_mat     rix-2w2rA01 A:41-222                                                                                                                                                 ------- Pfam domains
         Sec.struct. author ............-----..eeeeeeeeeeeeeee.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh..ee.hhhhhh....eeeeeeeeeeeeee............eeeeeeee....eeeeeeeeeeee.........hhhhhhhhhhhhhhhhhhhh.eeee.......eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2w2r A  41 LSNDFFGmEDmD-----SLRYEKFRFmLKmTVRSNKPFRSYDDVTAAVSQWDNSYIGmVGKRPFYKIIALIGSSHLQATPAVLADLNQPEYYATLTGRCFLPHRLGLIPPmFNVSETFRKPFNIGIYKGTLDFTFTVSDDESNEKVPHVWEYmNPKYQSQIQKEGLKFGLILSKKATGTWVLDQLSPFK 229
                                   |50||     |60      | 70        80        90       100       110       120       130       140       150|      160       170       180       190  |    200       210       220         
                                  48-MSE    58       67-MSE                         98-MSE                                              151-MSE                                   193-MSE                                
                                     51-MSE             70-MSE                                                                                                                                                           
                                      52                                                                                                                                                                                 

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2W2R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2W2R)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (16, 16)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (MATRX_VSNJO | P08325)
molecular function
    GO:0039660    structural constituent of virion    The action of a molecule that contributes to the structural integrity of a virion.
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
biological process
    GO:0039657    suppression by virus of host gene expression    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of gene expression in the host organism. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form.
    GO:0039522    suppression by virus of host mRNA export from nucleus    Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of movement of mRNA from the nucleus to the cytoplasm in the host organism.
    GO:0046755    viral budding    A viral process by which enveloped viruses acquire a host-derived membrane enriched in viral proteins to form their external envelope. The process starts when nucleocapsids, assembled or in the process of being built, induce formation of a membrane curvature in the host plasma or organelle membrane and wrap up in the forming bud. The process ends when the bud is eventually pinched off by membrane scission to release the enveloped particle into the lumenal or extracellular space.
    GO:0039702    viral budding via host ESCRT complex    Viral budding which uses a host ESCRT protein complex, or complexes, to mediate the budding process.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0033645    host cell endomembrane system    A collection of membranous structures involved in transport within the host cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0033644    host cell membrane    Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0044200    host cell nuclear membrane    Either of the lipid bilayers that surround the host nucleus and form the nuclear envelope; excludes the intermembrane space.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0019031    viral envelope    The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.
    GO:0055036    virion membrane    The lipid bilayer surrounding a virion.

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 Related Entries

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(-) Related Entries Specified in the PDB File

2w2s STRUCTURE OF THE LAGOS BAT VIRUS MATRIX PROTEIN