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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF B. SUBTILIS SPOVT
 
Authors :  I. Asen, S. Djuranovic, A. N. Lupas, K. Zeth
Date :  20 Oct 08  (Deposition) - 18 Nov 08  (Release) - 03 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Regulatory Gaf Domain Of Spovt, Transcription, Transcription Regulation, Repressor, Activator, Sporulation, Dna-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Asen, S. Djuranovic, A. N. Lupas, K. Zeth
Crystal Structure Of Spovt, The Final Modulator Of Gene Expression During Spore Development In Bacillus Subtilis
J. Mol. Biol. V. 386 962 2009
PubMed-ID: 18996130  |  Reference-DOI: 10.1016/J.JMB.2008.10.061

(-) Compounds

Molecule 1 - STAGE V SPORULATION PROTEIN T
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30B
    Expression System Strain: C41 (DE3)
    Expression System Taxid: 562
    Expression System Vector: PET
    Fragment: C-TERMINAL DOMAIN GAF DOMAIN, RESIDUES 56-178
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Strain: PY79
    Synonym: SPOVT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2W1R)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:117
 aligned with SP5T_BACSU | P37554 from UniProtKB/Swiss-Prot  Length:178

    Alignment length:117
                                    66        76        86        96       106       116       126       136       146       156       166       
           SP5T_BACSU    57 DFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEVEHKAVETAAGFLA 173
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh.eeeee....eeeee..hhhhhh....hhhhhhhhhhh..eee...eeee.....eeee.eeeeeeeee..eeeeeeeeee.....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 2w1r A  57 DFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEVEHKAVETAAGFLA 173
                                    66        76        86        96       106       116       126       136       146       156       166
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2W1R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2W1R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2W1R)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (SP5T_BACSU | P37554)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0030435    sporulation resulting in formation of a cellular spore    The process in which a relatively unspecialized cell acquires the specialized features of a cellular spore, a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and dessication resistance, and/or for reproduction.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SP5T_BACSU | P37554: 2ro5 2w1t

(-) Related Entries Specified in the PDB File

2w1t CRYSTAL STRUCTURE OF B. SUBTILIS SPOVT