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(-) Description

Title :  STRUCTURE AND MODE OF ACTION OF A MOSQUITOCIDAL HOLOTOXIN
 
Authors :  N. Treiber, D. J. Reinert, I. Carpusca, K. Aktories, G. E. Schulz
Date :  22 Apr 08  (Deposition) - 08 Jul 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Toxin, Adp-Ribosyltransferase, Lectin, Ricin-B-Like Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Treiber, D. J. Reinert, I. Carpusca, K. Aktories, G. E. Schulz
Structure And Mode Of Action Of A Mosquitocidal Holotoxin.
J. Mol. Biol. V. 381 150 2008
PubMed-ID: 18586267  |  Reference-DOI: 10.1016/J.JMB.2008.05.067

(-) Compounds

Molecule 1 - MOSQUITOCIDAL TOXIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: HOLOTOXIN, RESIDUES 30-870
    Organism Scientific: LYSINIBACILLUS SPHAERICUS
    Organism Taxid: 1421
    Strain: SSII-1
    Synonym: MTX HOLOTOXIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MPD3Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:756 , HOH A:2366 , HOH A:2367 , SER B:748 , PHE B:756 , ASN B:763 , HOH B:2224BINDING SITE FOR RESIDUE MPD A1867
2AC2SOFTWAREMET A:746 , ASN A:747 , SER A:748 , ILE A:761 , HOH A:2280 , PHE B:756 , ILE B:759 , HOH B:2306 , HOH B:2307BINDING SITE FOR RESIDUE MPD B1867
3AC3SOFTWAREASP B:551 , LEU B:552 , ASN B:554 , LEU B:564 , PHE B:566 , HIS B:569 , ASN B:573BINDING SITE FOR RESIDUE MPD B1868
4AC4SOFTWARETHR B:47 , TRP B:48 , GLN B:118 , PRO B:580 , SER B:582 , HOH B:2005 , HOH B:2308 , HOH B:2309BINDING SITE FOR RESIDUE GOL B1869

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VSE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VSE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VSE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VSE)

(-) Exons   (0, 0)

(no "Exon" information available for 2VSE)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:823
 aligned with Q03988_LYSSH | Q03988 from UniProtKB/TrEMBL  Length:870

    Alignment length:836
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860      
         Q03988_LYSSH    31 SPNSPKDNTWIQAASLTWLMDMSSLLYQLISTRIPSFASPNGLHMREQTIDSNTGQIQIDNEHRLLRWDRRPPNDIFLNGFIPRVTNQNLSPVEDTHLLNYLRTNSPSIFVSTTRARYNNLGLEITPWTPHSANNNIIYRYEIFAPGGIDINASFSRNHNPFPNEDEITFPGGIRPEFIRSTYEYHNGEIVRIWINPNFINPSTLNDVSGPSNISKVFWHENHSEGNNMDSKGFILDLDYNQDFDMFAPNGEIPNNNLLNNNSLNVIQNSEYQIKNKKDRNIVVTLDSDYGGSPVESYKNFGFENQKWNIKYDSKKNAYKIYNRETPTLLLSWNSNSSNGEQVIRGYTESGSNNQYWTIEKNVNGFYKFRNLSDPSKILDLKDGNTLNKTPLVVSSENSSSSQEWLIEKTNYQTVKDGTYQVSSKLNENKVIEQISTNKVHIFSNSDKENQVWNLIYNPILKAYKIKSLKYPNYSLAWDSNNTRTIVAATGDYNDQYWLIERNEDNTYIIRNYENRKIVLDLSNGSTTDGNGLLGFEFHGGINQRWIIKPFSFNSIQDGIYQFMTVINQDLIADLTTNNYTIATKTNNYSSNQKWTVTYNDKKRAYKIRNLQHAHLSLAWDSNHSDKIFGATGDYDDQYWIPILQTDGSFIFRNYKNPNKIFGTNGQPINDIPLKAQDVTGQNNQKWYLRHLNSSNNFTGYFNISSKKNFNKIITMNSNKTQAVIFDNIGINNQSWKLKYNDNKNAYQIHILDNFLYFQGGHNIVATMRNVTNDDLRSYWYVEYNFNKDGFIIRNAFDTSYVLDVFQGNFANNTPIITYQNYLNDNQLWNFIPSLG 866
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh...hhhhhhhhhhhhhhhhhh.hhhhh....ee..............hhhh.eeeee..hhhhhhhhh................hhhhhhhhh....eeeeee.ee.....ee...ee......eeeeeee.....eehhhhh...----....eeeee...hhh.eeeeeeee..eeeeeee........hhhhh.......eee.............---------..hhhhhhh.ee.................eeeeeee.....eeeee......eeeeeee...hhhh.eeeeee....eeeeee......eee....hhhhh...eee....hhhh.eeeee.....eeeee......eeee.hhh......eeee....hhhh.eeeee........eeeeeee..eeeeeeeee...eeeeee...hhhh.eeeeee....eeeeee......eeee.......eeee...hhhh.eeeee.....eeeee.....eeeee.hhh......eeeee...hhhh.eeeee........eeeeeee.....eeeee......eeeee...hhhh.eeeeee....eeeeee......eeee.......eeee...hhh.eeeeee.....eeeee.....eeee........ee.eeee...hhhh.eeeee........eeeeeee.....eeeee......eeeee...hhhhheeeeee....eeeeee..eeee........eee......hhh.eeeeeee....eeeeee.....eeeee.hhh......eeeee...hhhh.eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vse A  31 SPNSPKDNTWIQAASLTWLMDMSSLLYQLISTRIPSFASPNGLHMREQTIDSNTGQIQIDNEHRLLRWDRRPPNDIFLNGFIPRVTNQNLSPVEDTHLLNYLRTNSPSIFVSTTRARYNNLGLEITPWTPHSANNNIIYRYEIFAPGGIDINASFSRN----PNEDEITFPGGIRPEFIRSTYEYHNGEIVRIWINPNFINPSTLNDVSGPSNISKVFWHENHSEGNNMDS---------NQDFDMFAPNGEIPNNNLLNNNSLNVIQNSEYQIKNKKDRNIVVTLDSDYGGSPVESYKNFGFENQKWNIKYDSKKNAYKIYNRETPTLLLSWNSNSSNGEQVIRGYTESGSNNQYWTIEKNVNGFYKFRNLSDPSKILDLKDGNTLNKTPLVVSSENSSSSQEWLIEKTNYQTVKDGTYQVSSKLNENKVIEQISTNKVHIFSNSDKENQVWNLIYNPILKAYKIKSLKYPNYSLAWDSNNTRTIVAATGDYNDQYWLIERNEDNTYIIRNYENRKIVLDLSNGSTTDGNGLLGFEFHGGINQRWIIKPFSFNSIQDGIYQFMTVINQDLIADLTTNNYTIATKTNNYSSNQKWTVTYNDKKRAYKIRNLQHAHLSLAWDSNHSDKIFGATGDYDDQYWIPILQTDGSFIFRNYKNPNKIFGTNGQPINDIPLKAQDVTGQNNQKWYLRHLNSSNNFTGYFNISSKKNFNKIITMNSNKTQAVIFDNIGINNQSWKLKYNDNKNAYQIHILDNFLYFQGGHNIVATMRNVTNDDLRSYWYVEYNFNKDGFIIRNAFDTSYVLDVFQGNFANNTPIITYQNYLNDNQLWNFIPSLG 866
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       | -  |    200       210       220       230       240       250       260|        -|      280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860      
                                                                                                                                                                                       188  193                                                                 261       271                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:822
 aligned with Q03988_LYSSH | Q03988 from UniProtKB/TrEMBL  Length:870

    Alignment length:836
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860      
         Q03988_LYSSH    31 SPNSPKDNTWIQAASLTWLMDMSSLLYQLISTRIPSFASPNGLHMREQTIDSNTGQIQIDNEHRLLRWDRRPPNDIFLNGFIPRVTNQNLSPVEDTHLLNYLRTNSPSIFVSTTRARYNNLGLEITPWTPHSANNNIIYRYEIFAPGGIDINASFSRNHNPFPNEDEITFPGGIRPEFIRSTYEYHNGEIVRIWINPNFINPSTLNDVSGPSNISKVFWHENHSEGNNMDSKGFILDLDYNQDFDMFAPNGEIPNNNLLNNNSLNVIQNSEYQIKNKKDRNIVVTLDSDYGGSPVESYKNFGFENQKWNIKYDSKKNAYKIYNRETPTLLLSWNSNSSNGEQVIRGYTESGSNNQYWTIEKNVNGFYKFRNLSDPSKILDLKDGNTLNKTPLVVSSENSSSSQEWLIEKTNYQTVKDGTYQVSSKLNENKVIEQISTNKVHIFSNSDKENQVWNLIYNPILKAYKIKSLKYPNYSLAWDSNNTRTIVAATGDYNDQYWLIERNEDNTYIIRNYENRKIVLDLSNGSTTDGNGLLGFEFHGGINQRWIIKPFSFNSIQDGIYQFMTVINQDLIADLTTNNYTIATKTNNYSSNQKWTVTYNDKKRAYKIRNLQHAHLSLAWDSNHSDKIFGATGDYDDQYWIPILQTDGSFIFRNYKNPNKIFGTNGQPINDIPLKAQDVTGQNNQKWYLRHLNSSNNFTGYFNISSKKNFNKIITMNSNKTQAVIFDNIGINNQSWKLKYNDNKNAYQIHILDNFLYFQGGHNIVATMRNVTNDDLRSYWYVEYNFNKDGFIIRNAFDTSYVLDVFQGNFANNTPIITYQNYLNDNQLWNFIPSLG 866
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RicinB_lectin_2-2vseB03 B:479-579                                                                    ----Botulinum_HA-17-2vseB01 B:584-708                                                                                            -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RicinB_lectin_2-2vseB04 B:479-579                                                                    ----Botulinum_HA-17-2vseB02 B:584-708                                                                                            -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RicinB_lectin_2-2vseB05 B:479-579                                                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RicinB_lectin_2-2vseB06 B:479-579                                                                    ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ......hhhhhh...hhhhhhhhhhhhhhhhhh.hhhhh....ee..............hhhh.eeeee..hhhhhhhhh................hhhhhhhhh....eeeeee.ee.....ee...ee......eeeeeee.....eehhhhh...----....eeeee...hhh.eeeeeeee..eeeeeee........hhhhh.......eee............----------..hhhhhhh.ee.................eeeeeee.....eeeee......eeeeeee...hhhh.eeeeee....eeeeee......eee............eee....hhhh.eeeee.....eeeee......eeee.hhh......eeee....hhhh.eeeee........eeeeeee..eeeeeeeee...eeeeee...hhhh.eeeeee....eeeeee......eeee.......eeee...hhh.eeeeee.....eeeee.....eeeee.hhh......eeeee...hhhh.eeeee........eeeeeee.....eeeee......eeeee...hhhh.eeeeee....eeeeee......eeee.......eeee...hhh.eeeeee.....eeeee.....eeee........ee.eeee...hhhh.eeeee........eeeeeee..eeeeeeee......eeeee...hhhhh..........eeeeee..eeee........eee......hhh.......................eeeee.hhh......eeeee...hhhh......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vse B  31 SPNSPKDNTWIQAASLTWLMDMSSLLYQLISTRIPSFASPNGLHMREQTIDSNTGQIQIDNEHRLLRWDRRPPNDIFLNGFIPRVTNQNLSPVEDTHLLNYLRTNSPSIFVSTTRARYNNLGLEITPWTPHSANNNIIYRYEIFAPGGIDINASFSRN----PNEDEITFPGGIRPEFIRSTYEYHNGEIVRIWINPNFINPSTLNDVSGPSNISKVFWHENHSEGNNMD----------NQDFDMFAPNGEIPNNNLLNNNSLNVIQNSEYQIKNKKDRNIVVTLDSDYGGSPVESYKNFGFENQKWNIKYDSKKNAYKIYNRETPTLLLSWNSNSSNGEQVIRGYTESGSNNQYWTIEKNVNGFYKFRNLSDPSKILDLKDGNTLNKTPLVVSSENSSSSQEWLIEKTNYQTVKDGTYQVSSKLNENKVIEQISTNKVHIFSNSDKENQVWNLIYNPILKAYKIKSLKYPNYSLAWDSNNTRTIVAATGDYNDQYWLIERNEDNTYIIRNYENRKIVLDLSNGSTTDGNGLLGFEFHGGINQRWIIKPFSFNSIQDGIYQFMTVINQDLIADLTTNNYTIATKTNNYSSNQKWTVTYNDKKRAYKIRNLQHAHLSLAWDSNHSDKIFGATGDYDDQYWIPILQTDGSFIFRNYKNPNKIFGTNGQPINDIPLKAQDVTGQNNQKWYLRHLNSSNNFTGYFNISSKKNFNKIITMNSNKTQAVIFDNIGINNQSWKLKYNDNKNAYQIHILDNFLYFQGGHNIVATMRNVTNDDLRSYWYVEYNFNKDGFIIRNAFDTSYVLDVFQGNFANNTPIITYQNYLNDNQLWNFIPSLG 866
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       | -  |    200       210       220       230       240       250       260         -|      280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860      
                                                                                                                                                                                       188  193                                                                260        271
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VSE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VSE)

(-) Pfam Domains  (2, 6)

Asymmetric Unit
(-)
Clan: Trefoil (131)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q03988_LYSSH | Q03988: 2cb4 2cb6 2vsa

(-) Related Entries Specified in the PDB File

2cb4 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE MOSQUITOCIDAL TOXIN FROM BACILLUS SPHAERICUS, MUTANT E197Q
2cb6 CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE MOSQUITOCIDAL TOXIN FROM BACILLUS SPHAERICUS, MUTANT E195Q
2vsa STRUCTURE AND MODE OF ACTION OF A MOSQUITOCIDAL HOLOTOXIN