2VOS - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   MYCOBACTERIUM TUBERCULOSIS FOLYLPOLYGLUTAMATE SYNTHASE COMPLEXED WITH ADP

Authors :   P. G. Young, E. N. Baker, P. Metcalf, C. A. Smith

Date :   19 Feb 08 (Deposition) - 01 Jul 08 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A

Keywords :   Ligase, Peptidoglycan Synthesis, Cell Division, Folate Metabolism, Cell Wall Biogenesis/Degradation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. G. Young, C. A. Smith, P. Metcalf, E. N. Baker
Structures Of Mycobacterium Tuberculosisfolylpolyglutamate Synthase Complexed With Adp And Amppcp.
Acta Crystallogr. , Sect. D V. 64 745 2008
PubMed-ID: 18566510 | Reference-DOI: 10.1107/S0907444908012262

Molecule 1 - FOLYLPOLYGLUTAMATE SYNTHASE PROTEIN FOLC
	Chains	:	A
	EC Number	:	6.3.2.17
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	GST-HIS6-MTBFPGS
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector	:	PET42A-RTEV
	Organism Scientific	:	MYCOBACTERIUM TUBERCULOSIS
	Organism Taxid	:	83332
	Strain	:	H37RV
	Synonym	:	FOLYLPOLYGLUTAMATE SYNTHASE, FOLYLPOLY-GAMMA-GLUTAMATE SYNTHETASE, FPGS, FOLYLPOLYGLUTAMATE SYNTHASE

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 15)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	CO	4	Ligand/Ion	COBALT (II) ION
3	GOL	2	Ligand/Ion	GLYCEROL
4	MG	1	Ligand/Ion	MAGNESIUM ION
5	MSE	7	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:74 , ASN A:75 , GLY A:76 , LYS A:77 , THR A:78 , SER A:79 , GLU A:176 , HIS A:299 , ASN A:303 , ARG A:340 , ASP A:353 , ALA A:354 , ALA A:355 , GLY A:360 , ALA A:363 , CO A:1493 , HOH A:2012 , HOH A:2155 , HOH A:2156 , HOH A:2159 , HOH A:2160	BINDING SITE FOR RESIDUE ADP A1490
2	AC2	SOFTWARE	ASP A:202 , HIS A:356 , HOH A:2012 , HOH A:2060	BINDING SITE FOR RESIDUE MG A1491
3	AC3	SOFTWARE	ASP A:326 , HOH A:2158	BINDING SITE FOR RESIDUE CO A1492
4	AC4	SOFTWARE	THR A:78 , SER A:100 , GLU A:176 , ADP A:1490 , HOH A:2159 , HOH A:2160	BINDING SITE FOR RESIDUE CO A1493
5	AC5	SOFTWARE	HIS A:203 , ASP A:205 , HOH A:2161 , HOH A:2162	BINDING SITE FOR RESIDUE CO A1494
6	AC6	SOFTWARE	HIS A:370 , ASP A:455 , ASP A:457 , HOH A:2163 , HOH A:2164 , HOH A:2165	BINDING SITE FOR RESIDUE CO A1495
7	AC7	SOFTWARE	THR A:74 , SER A:200 , ASP A:202 , HIS A:203 , LYS A:218 , HOH A:2166	BINDING SITE FOR RESIDUE GOL A1496
8	AC8	SOFTWARE	ARG A:82 , ASP A:85 , ARG A:97 , GLY A:114 , ALA A:334 , VAL A:335 , THR A:336 , HOH A:2167 , HOH A:2168	BINDING SITE FOR RESIDUE GOL A1497

(no "SS Bond" information available for 2VOS)

Asymmetric/Biological Unit

No.	Residues
1	Ser A:100	-	Pro A:101
2	Ala A:168	-	Pro A:169
3	Ala A:347	-	Pro A:348

Asymmetric/Biological Unit (7, 7)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_FOLC_MYCTU_003 *	I	43	A	FOLC_MYCTU	---	---	A	I	45	A
2	UniProt	VAR_FOLC_MYCTU_004 *	I	43	T	FOLC_MYCTU	---	---	A	I	45	T
3	UniProt	VAR_FOLC_MYCTU_005 *	N	73	S	FOLC_MYCTU	---	---	A	N	75	S
4	UniProt	VAR_FOLC_MYCTU_006 *	S	150	G	FOLC_MYCTU	---	---	A	S	152	G
5	UniProt	VAR_FOLC_MYCTU_007 *	F	152	S	FOLC_MYCTU	---	---	A	F	154	S
6	UniProt	VAR_FOLC_MYCTU_008 *	E	153	A	FOLC_MYCTU	---	---	A	E	155	A
7	UniProt	VAR_FOLC_MYCTU_009 *	E	153	G	FOLC_MYCTU	---	---	A	E	155	G
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FOLYLPOLYGLU_SYNT_2	PS01012	Folylpolyglutamate synthase signature 2.	FOLC_MYCTU	172-187	1	A:174-189

(no "Exon" information available for 2VOS)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:448
 aligned with FOLC_MYCTU | I6Y0R5 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:466
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481      
           FOLC_MYCTU    22 DEIASLLQVEHLLDQRWPETRIDPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNVINAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVTSPGRLERMRSAPTVFIDAAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKDVDGILAALEPVFDSVVVTHNGSPRALDVEALALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFGRDPQ 487
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...---.....hhhhhhhhhhh.hhhhh..eeeee...hhhhhhhhhhhhhhhh...eeee......hhhh.eee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhh-----...hhhhhhhhhhhhhhhhh...eeeee................eeee.............hhhhhhhhhhh......--....eeee...hhhhhhhhhhhhhhh..eeee.....eeeeeeee..eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhhhhh..----..hhhhhhhhhhh.......eeee...eeee....hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhh....eeee.........hhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhh......----.eeeeee.hhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ---------------------A-----------------------------S----------------------------------------------------------------------------G-SA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------T-------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------FOLYLPOLYGLU_SYN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vos A  24 DEIASLLQVEHLLDQRW---RIDPSLTRISALmDLLGSPQRSYPSIHIAGTNGKTSVARmVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQAS-----PAmSKFEVLTAmAFAAFADAPVDVAVVEVGmGGRWDATNVINAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAP--SPDTVAVIGRQVPKVmEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGA----QLDGDAVRAGFAAVTSPGRLERmRSAPTVFIDAAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKDVDGILAALEPVFDSVVVTHNGSPRALDVEALALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAG----RTGIVITGSVVTAGAARTLFGRDPQ 489
                                    33      |  -|       53  |     63        73        83        93       103       113       123       133       143     | 153      |163       173     | 183       193       203       213       223  |  | 233       243|      253       263       273       283       293       303       313   |   323       333       343|      353       363       373       383       393       403       413       423       433       443       453      |  - |     473       483      
                                           40  44          56-MSE                     83-MSE                                                     143   149 |      160-MSE            179-MSE                                        226  |            244-MSE                                                                  317  322                   344-MSE                                                                                                             460  465                        
                                                                                                                                                         151-MSE                                                                       229

Chain A from PDB  Type:PROTEIN  Length:448
 aligned with O53174_MYCTO | O53174 from UniProtKB/TrEMBL  Length:487

    Alignment length:466
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481      
         O53174_MYCTO    22 DEIASLLQVEHLLDQRWPETRIDPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATNVINAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGAGAQRQLDGDAVRAGFAAVTSPGRLERMRSAPTVFIDAAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKDVDGILAALEPVFDSVVVTHNGSPRALDVEALALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAGDAFSRTGIVITGSVVTAGAARTLFGRDPQ 487
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...---.....hhhhhhhhhhh.hhhhh..eeeee...hhhhhhhhhhhhhhhh...eeee......hhhh.eee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhh-----...hhhhhhhhhhhhhhhhh...eeeee................eeee.............hhhhhhhhhhh......--....eeee...hhhhhhhhhhhhhhh..eeee.....eeeeeeee..eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhhhhh..----..hhhhhhhhhhh.......eeee...eeee....hhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhh....eeee.........hhhhhhhhhhhhhh...eee..hhhhhhhhhhhhhhhhhh......----.eeeeee.hhhhhhhhhhhh..... Sec.struct. author
             SAPs(SNPs) (1) ---------------------A-----------------------------S----------------------------------------------------------------------------G-SA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------T-------------------------------------------------------------------------------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vos A  24 DEIASLLQVEHLLDQRW---RIDPSLTRISALmDLLGSPQRSYPSIHIAGTNGKTSVARmVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVATYREIEPLVALIDQQSQAS-----PAmSKFEVLTAmAFAAFADAPVDVAVVEVGmGGRWDATNVINAPVAVITPISIDHVDYLGADIAGIAGEKAGIITRAP--SPDTVAVIGRQVPKVmEVLLAESVRADASVAREDSEFAVLRRQIAVGGQVLQLQGLGGVYSDIYLPLHGEHQAHNAVLALASVEAFFGA----QLDGDAVRAGFAAVTSPGRLERmRSAPTVFIDAAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDKDVDGILAALEPVFDSVVVTHNGSPRALDVEALALAAGERFGPDRVRTAENLRDAIDVATSLVDDAAADPDVAG----RTGIVITGSVVTAGAARTLFGRDPQ 489
                                    33      |  -|       53  |     63        73        83        93       103       113       123       133       143     | 153      |163       173     | 183       193       203       213       223  |  | 233       243|      253       263       273       283       293       303       313   |   323       333       343|      353       363       373       383       393       403       413       423       433       443       453      |  - |     473       483      
                                           40  44          56-MSE                     83-MSE                                                     143   149 |      160-MSE            179-MSE                                        226  |            244-MSE                                                                  317  322                   344-MSE                                                                                                             460  465                        
                                                                                                                                                         151-MSE                                                                       229

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2VOS)

(no "CATH Domain" information available for 2VOS)

(no "Pfam Domain" information available for 2VOS)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (O53174_MYCTO | O53174)

molecular function
	GO:0043531	ADP binding	Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0050897	cobalt ion binding	Interacting selectively and non-covalently with a cobalt (Co) ion.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004326	tetrahydrofolylpolyglutamate synthase activity	Catalysis of the reaction: ATP + tetrahydrofolyl-(Glu)(n) + L-glutamate = ADP + phosphate + tetrahydrofolyl-(Glu)(n+1).
biological process
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0009396	folic acid-containing compound biosynthetic process	The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
	GO:0040007	growth	The increase in size or mass of an entire organism, a part of an organism or a cell.
	GO:0046901	tetrahydrofolylpolyglutamate biosynthetic process	The chemical reactions and pathways resulting in the formation of tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues.

Chain A (FOLC_MYCTU | I6Y0R5)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004326	tetrahydrofolylpolyglutamate synthase activity	Catalysis of the reaction: ATP + tetrahydrofolyl-(Glu)(n) + L-glutamate = ADP + phosphate + tetrahydrofolyl-(Glu)(n+1).
biological process
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0009396	folic acid-containing compound biosynthetic process	The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.
	GO:0046901	tetrahydrofolylpolyglutamate biosynthetic process	The chemical reactions and pathways resulting in the formation of tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues.

Asymmetric/Biological Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Ala A:168 - Pro A:169	[ RasMol ]
		Ala A:347 - Pro A:348	[ RasMol ]
		Ser A:100 - Pro A:101	[ RasMol ]

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2vor	CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS FOLYLPOLYGLUTAMATE SYNTHASE COMPLEXED WITH ADP AND AMPPCP

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 15)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (7, 7)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (11, 18)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File