2V88 - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2SK4ME2 PEPTIDE

Authors :   S. Ramon-Maiques, W. Yang

Date :   03 Aug 07 (Deposition) - 11 Dec 07 (Release) - 21 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,D,F
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,F  (1x)

Keywords :   V(D)J Recombination, Covalent Modifications, Rag, Histone, Nucleus, Nuclease, Hydrolase, Phd Finger, Dna-Binding, Recombinase, Endonuclease, Dimethyl Lysine, Dna Recombination, Protein Binding, Symmetric Dimethylated Arginine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Ramon-Maiques, A. J. Kuo, D. Carney, A. G. W. Matthews, M. A. Oettinger, O. Gozani, W. Yang
The Plant Homeodomain Finger Of Rag2 Recognizes Histone H3 Methylated At Both Lysine-4 And Arginine-2.
Proc. Nat. Acad. Sci. Usa V. 104 18993 2007
PubMed-ID: 18025461 | Reference-DOI: 10.1073/PNAS.0709170104
(for further references see the PDB file header)

Molecule 1 - VDJ RECOMBINATION-ACTIVATING PROTEIN 2
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 414-487
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	RAG2, RAG2-PHD FINGER

Molecule 2 - H3R2ME2SK4ME3 PEPTIDE
	Chains	:	D, F
	Fragment	:	H3 (1-21), BIOTINYLATED AT C-TERMINUS
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	SYMMETRIC DI-METHYLATED R2 AND DI-METHYLATED K4
	Synthetic	:	YES

		1	2	3	4
Asymmetric Unit	:	A	B	D	F
Biological Unit 1 (1x)	:	A		D
Biological Unit 2 (1x)	:		B		F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	2MR	2	Mod. Amino Acid	N3, N4-DIMETHYLARGININE
2	MLY	2	Mod. Amino Acid	N-DIMETHYL-LYSINE
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	2MR	1	Mod. Amino Acid	N3, N4-DIMETHYLARGININE
2	MLY	1	Mod. Amino Acid	N-DIMETHYL-LYSINE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	2MR	1	Mod. Amino Acid	N3, N4-DIMETHYLARGININE
2	MLY	1	Mod. Amino Acid	N-DIMETHYL-LYSINE
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:419 , CYS A:423 , HIS A:455 , CYS A:458	BINDING SITE FOR RESIDUE ZN A1488
2	AC2	SOFTWARE	CYS A:446 , HIS A:452 , CYS A:478 , HIS A:481	BINDING SITE FOR RESIDUE ZN A1489
3	AC3	SOFTWARE	CYS B:419 , CYS B:423 , HIS B:455 , CYS B:458	BINDING SITE FOR RESIDUE ZN B1488
4	AC4	SOFTWARE	CYS B:446 , HIS B:452 , CYS B:478 , HIS B:481	BINDING SITE FOR RESIDUE ZN B1489

(no "SS Bond" information available for 2V88)

(no "Cis Peptide Bond" information available for 2V88)

(no "SAP(SNP)/Variant" information available for 2V88)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HISTONE_H3_1	PS00322	Histone H3 signature 1.	H32_MOUSE	15-21	2	D:8-8 F:8-8

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HISTONE_H3_1	PS00322	Histone H3 signature 1.	H32_MOUSE	15-21	1	D:8-8 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HISTONE_H3_1	PS00322	Histone H3 signature 1.	H32_MOUSE	15-21	1	- F:8-8

Asymmetric Unit (1, 2)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENSMUST00000044031	1a	ENSMUSE00000230550	chr2:101464875-101465027	153	RAG2_MOUSE	-	0	0	-	-
1.2	ENSMUST00000044031	2	ENSMUSE00000230542	chr2:101468294-101468356	63	RAG2_MOUSE	-	0	0	-	-
1.3b	ENSMUST00000044031	3b	ENSMUSE00000230533	chr2:101469479-101472685	3207	RAG2_MOUSE	1-536	536	2	A:410-487 (gaps) B:410-487 (gaps)	107 107

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:78
 aligned with RAG2_MOUSE | P21784 from UniProtKB/Swiss-Prot  Length:527

    Alignment length:107
                                   390       400       410       420       430       440       450       460       470       480       
           RAG2_MOUSE   381 SEEFCFSAEATSFDGDDEFDTYNEDDEDDESVTGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARA 487
               SCOP domains d2v8                             8a_ A: automated matches                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....-----------------------------.............................eeee.....eeee.hhhh.hhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3b  PDB: A:410-487 (gaps) UniProt: 1-536 [INCOMPLETE]                                                Transcript 1
                 2v88 A 410 SPEF-----------------------------GYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARA 487
                               |     -         -         -   |   420       430       440       450       460       470       480       
                             413                           414

Chain B from PDB  Type:PROTEIN  Length:78
 aligned with RAG2_MOUSE | P21784 from UniProtKB/Swiss-Prot  Length:527

    Alignment length:107
                                   390       400       410       420       430       440       450       460       470       480       
           RAG2_MOUSE   381 SEEFCFSAEATSFDGDDEFDTYNEDDEDDESVTGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARA 487
               SCOP domains d2v8                             8b_ B: automated matches                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------RAG2_PHD-2v88B01 B:414-487                                                 Pfam domains (1)
           Pfam domains (2) ---------------------------------RAG2_PHD-2v88B02 B:414-487                                                 Pfam domains (2)
         Sec.struct. author hhhh-----------------------------h............................eeee.....eeee.hhhh.hhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.3b  PDB: B:410-487 (gaps) UniProt: 1-536 [INCOMPLETE]                                                Transcript 1
                 2v88 B 410 SPEF-----------------------------GYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARA 487
                               |     -         -         -   |   420       430       440       450       460       470       480       
                             413                           414

Chain D from PDB  Type:PROTEIN  Length:8
 aligned with H32_MOUSE | P84228 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:15
                                    11     
            H32_MOUSE     2 ARTKQTARKSTGGKA  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ..ee...-------. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE -------------HI PROSITE
                 Transcript --------------- Transcript
                 2v88 D   1 ArTkQTA-------A   8
                             | |  |  -    |
                             | |  7       8
                             2-2MR         
                               4-MLY

Chain D from PDB  Type:PROTEIN  Length:8
 aligned with Q5TEC6_HUMAN | Q5TEC6 from UniProtKB/TrEMBL  Length:136

    Alignment length:15
                                    11     
         Q5TEC6_HUMAN     2 ARTKQTARKSTGGKA  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ..ee...-------. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 2v88 D   1 ArTkQTA-------A   8
                             | |  |  -    |
                             | |  7       8
                             2-2MR         
                               4-MLY

Chain F from PDB  Type:PROTEIN  Length:8
 aligned with H32_MOUSE | P84228 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:15
                                    11     
            H32_MOUSE     2 ARTKQTARKSTGGKA  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ..ee...-------. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE -------------HI PROSITE
                 Transcript --------------- Transcript
                 2v88 F   1 ArTkQTA-------A   8
                             | |  |  -    |
                             | |  7       8
                             2-2MR         
                               4-MLY

Chain F from PDB  Type:PROTEIN  Length:8
 aligned with Q5TEC6_HUMAN | Q5TEC6 from UniProtKB/TrEMBL  Length:136

    Alignment length:15
                                    11     
         Q5TEC6_HUMAN     2 ARTKQTARKSTGGKA  16
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ..ee...-------. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 2v88 F   1 ArTkQTA-------A   8
                             | |  |  -    |
                             | |  7       8
                             2-2MR         
                               4-MLY

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Small proteins (3458)

Fold: FYVE/PHD zinc finger (57)

Superfamily: FYVE/PHD zinc finger (57)

Family: PHD domain (30)

Protein domain: automated matches (12)

Mouse (Mus musculus) [TaxId: 10090] (7)

1a	d2v88a_	A:
1b	d2v88b_	B:

(no "CATH Domain" information available for 2V88)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: zf-FYVE-PHD (57)

Family: RAG2_PHD (7)

Mus musculus (Mouse) (7)

1a	RAG2_PHD-2v88B01	B:414-487
1b	RAG2_PHD-2v88B02	B:414-487

Asymmetric Unit(hide GO term definitions)

Chain A,B (RAG2_MOUSE | P21784)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003682	chromatin binding	Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0035064	methylated histone binding	Interacting selectively and non-covalently with a histone in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes.
	GO:0035091	phosphatidylinositol binding	Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
	GO:0005547	phosphatidylinositol-3,4,5-trisphosphate binding	Interacting selectively and non-covalently with phosphatidylinositol-3,4,5-trisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3', 4' and 5' positions.
	GO:0043325	phosphatidylinositol-3,4-bisphosphate binding	Interacting selectively and non-covalently with phosphatidylinositol-3,4-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 4' positions.
	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	Interacting selectively and non-covalently with phosphatidylinositol-3,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' and 5' positions.
	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding	Interacting selectively and non-covalently with phosphatidylinositol-4,5-bisphosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 4' and 5' positions.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0061630	ubiquitin protein ligase activity	Catalysis of the transfer of ubiquitin to a substrate protein via the reaction X-ubiquitin + S -> X + S-ubiquitin, where X is either an E2 or E3 enzyme, the X-ubiquitin linkage is a thioester bond, and the S-ubiquitin linkage is an amide bond: an isopeptide bond between the C-terminal glycine of ubiquitin and the epsilon-amino group of lysine residues in the substrate or, in the linear extension of ubiquitin chains, a peptide bond the between the C-terminal glycine and N-terminal methionine of ubiquitin residues.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0030183	B cell differentiation	The process in which a precursor cell type acquires the specialized features of a B cell. A B cell is a lymphocyte of B lineage with the phenotype CD19-positive and capable of B cell mediated immunity.
	GO:0002358	B cell homeostatic proliferation	The non-specific expansion of B cell populations within a whole or part of an organism to reach to a total number of B cells which will then remain stable over time in the absence of an external stimulus.
	GO:0002326	B cell lineage commitment	The process in which a lymphoid progenitor cell becomes committed to become any type of B cell.
	GO:0006310	DNA recombination	Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction.
	GO:0030217	T cell differentiation	The process in which a precursor cell type acquires characteristics of a more mature T-cell. A T cell is a type of lymphocyte whose definin characteristic is the expression of a T cell receptor complex.
	GO:0033077	T cell differentiation in thymus	The process in which a precursor cell type acquires the specialized features of a T cell via a differentiation pathway dependent upon transit through the thymus.
	GO:0002360	T cell lineage commitment	The process in which a lymphoid progenitor cell becomes committed to becoming any type of T cell.
	GO:0033151	V(D)J recombination	The process in which immune receptor V, D, and J, or V and J gene segments, depending on the specific receptor, are recombined within a single locus utilizing the conserved heptamer and nonomer recombination signal sequences (RSS).
	GO:0046622	positive regulation of organ growth	Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism.
	GO:0002331	pre-B cell allelic exclusion	Expression of a single heavy chain allele during pre-B cell differentiation.
	GO:0016567	protein ubiquitination	The process in which one or more ubiquitin groups are added to a protein.
cellular component
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain D,F (Q5TEC6_HUMAN | Q5TEC6)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
cellular component
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0000786	nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain D,F (H32_MOUSE | P84228)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003682	chromatin binding	Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
	GO:0042393	histone binding	Interacting selectively and non-covalently with a histone, any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes. They are involved in the condensation and coiling of chromosomes during cell division and have also been implicated in nonspecific suppression of gene activity.
	GO:0046982	protein heterodimerization activity	Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
biological process
	GO:0032776	DNA methylation on cytosine	The covalent transfer of a methyl group to C-5 or N-4 of cytosine in a DNA molecule.
	GO:0006335	DNA replication-dependent nucleosome assembly	The formation of nucleosomes on newly replicated DNA, coupled to strand elongation.
	GO:0000183	chromatin silencing at rDNA	Repression of transcription of ribosomal DNA by altering the structure of chromatin.
	GO:0000122	negative regulation of transcription from RNA polymerase II promoter	Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006334	nucleosome assembly	The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
	GO:0002230	positive regulation of defense response to virus by host	Any host process that results in the promotion of antiviral immune response mechanisms, thereby limiting viral replication.
	GO:0045815	positive regulation of gene expression, epigenetic	Any epigenetic process that activates or increases the rate of gene expression.
	GO:0051290	protein heterotetramerization	The formation of a protein heterotetramer, a macromolecular structure consisting of four noncovalently associated subunits, of which not all are identical.
	GO:0060968	regulation of gene silencing	Any process that modulates the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.
	GO:0098792	xenophagy	The macroautophagy process in which a region of cytoplasm containing an intracellular pathogen or some part of an intracellular pathogen (e.g. viral capsid) is enclosed in a double membrane bound autophagosome, which then fuses with the lysosome leading to degradation of the contents.
cellular component
	GO:0000785	chromatin	The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
	GO:0005694	chromosome	A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0000228	nuclear chromosome	A chromosome that encodes the nuclear genome and is found in the nucleus of a eukaryotic cell during the cell cycle phases when the nucleus is intact.
	GO:0000784	nuclear chromosome, telomeric region	The terminal region of a linear nuclear chromosome that includes the telomeric DNA repeats and associated proteins.
	GO:0000788	nuclear nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA in the nucleus into higher order structures.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0000786	nucleosome	A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0043234	protein complex	A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2v88)

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	2v88
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	H32_MOUSE \| P84228
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	Q5TEC6_HUMAN \| Q5TEC6
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	RAG2_MOUSE \| P21784
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		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	H32_MOUSE \| P84228
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q5TEC6_HUMAN \| Q5TEC6
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	RAG2_MOUSE \| P21784
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	H32_MOUSE \| P84228	:	1kx4 1kx5 2v86 2v87 4qwn 4qx7 4qx8 4qxb 4qxc 4qxh
	Q5TEC6_HUMAN \| Q5TEC6	:	2cnx 2co0 2v83 2v85 2v89 2vnf 2x0l
	RAG2_MOUSE \| P21784	:	2jwo 2v83 2v85 2v86 2v87 2v89 4wwx
UniProtKB/TrEMBL
	Q5TEC6_HUMAN \| Q5TEC6	:	4h75

2a23	A PHD FINGER MOTIF IN THE C-TERMINUS OF RAG2 MODULATESRECOMBINATION ACTIVITY
2v83	CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE
2v85	CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME1K4ME3 PEPTIDE
2v86	CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2AK4ME3 PEPTIDE
2v87	CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3R2ME2SK4ME3 PEPTIDE
2v89	CRYSTAL STRUCTURE OF RAG2-PHD FINGER IN COMPLEX WITH H3K4ME3 PEPTIDE AT 1.1A RESOLUTION

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (1, 2)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (46, 54)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File