2V5U - JenaLib

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Title :   I92A FLAVODOXIN FROM ANABAENA

Authors :   M. Martinez-Julvez, B. Herguedas, S. Frago, A. Serrano, R. Molina, C. H B. Schierbeek, M. Medina, J. A. Hermoso

Date :   10 Jul 07 (Deposition) - 16 Oct 07 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.99

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Fmn, Transport, Flavoprotein, Electron Transfer, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Frago, G. Goni, B. Herguedas, J. R. Peregrina, A. Serrano, I. Perez-Dorado, R. Molina, C. Gomez-Moreno, J. A. Hermoso, M. Martinez-Julvez, S. G. Mayhew, M. Medina
Tuning Of The Fmn Binding And Oxido-Reduction Properties By Neighboring Side Chains In Anabaena Flavodoxin.
Arch. Biochem. Biophys. V. 467 206 2007
PubMed-ID: 17904516 | Reference-DOI: 10.1016/J.ABB.2007.08.024

Molecule 1 - FLAVODOXIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Cell Line	:	TG1
	Expression System Plasmid	:	PTRC99A
	Expression System Strain	:	TG1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Scientific	:	ANABAENA SP.
	Organism Taxid	:	1168
	Strain	:	PCC 7119

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	FMN	2	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	FMN	1	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:10 , GLN A:11 , THR A:12 , GLY A:13 , LYS A:14 , THR A:15 , PRO A:55 , THR A:56 , TRP A:57 , ASN A:58 , ILE A:59 , GLY A:60 , THR A:88 , GLY A:89 , ASP A:90 , TYR A:94 , ASN A:97 , PHE A:98 , GLN A:99 , ASP A:146 , HOH A:2078 , HOH A:2080 , HOH A:2104 , TRP B:120 , SER B:158	BINDING SITE FOR RESIDUE FMN A1170
2	AC2	SOFTWARE	SER A:165 , HOH A:2098 , THR B:10 , GLN B:11 , THR B:12 , GLY B:13 , LYS B:14 , THR B:15 , PRO B:55 , THR B:56 , TRP B:57 , ASN B:58 , ILE B:59 , GLY B:60 , THR B:88 , GLY B:89 , ASP B:90 , TYR B:94 , ASN B:97 , PHE B:98 , GLN B:99 , ASP B:146 , HOH B:2032 , HOH B:2082 , HOH B:2085	BINDING SITE FOR RESIDUE FMN B1170

(no "SS Bond" information available for 2V5U)

(no "Cis Peptide Bond" information available for 2V5U)

(no "SAP(SNP)/Variant" information available for 2V5U)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FLAV_NOSSO	5-165	2	A:4-164 B:4-164
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FLAV_NOSSO	7-23	2	A:6-22 B:6-22

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FLAV_NOSSO	5-165	1	A:4-164 -
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FLAV_NOSSO	7-23	1	A:6-22 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FLAVODOXIN_LIKE	PS50902	Flavodoxin-like domain profile.	FLAV_NOSSO	5-165	1	- B:4-164
2	FLAVODOXIN	PS00201	Flavodoxin signature.	FLAV_NOSSO	7-23	1	- B:6-22

(no "Exon" information available for 2V5U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:167
 aligned with FLAV_NOSSO | P0A3E0 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:167
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       
           FLAV_NOSSO     4 KIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTWNIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEFGL 170
               SCOP domains d2v5ua_ A: automated matches                                                                                                                                            SCOP domains
               CATH domains 2v5uA00 A:3-169  [code=3.40.50.360, no name defined]                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhhhh...eeeee....hhhhhhhh.eeeee..ee...eehhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhh..ee...ee...........ee..ee..eee.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -FLAVODOXIN_LIKE  PDB: A:4-164 UniProt: 5-165                                                                                                                     ----- PROSITE (1)
                PROSITE (2) ---FLAVODOXIN       --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5u A   3 KIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTWNIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQAGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEFGL 169
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162

Chain B from PDB  Type:PROTEIN  Length:169
 aligned with FLAV_NOSSO | P0A3E0 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:169
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161         
           FLAV_NOSSO     2 SKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTWNIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEFGL 170
               SCOP domains d2v5ub_ B: automated matches                                                                                                                                              SCOP domains
               CATH domains 2v5uB00 B:1-169  [code=3.40.50.360, no name defined]                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhhhhhhhhhhhh...eeeee....hhhhhhhh.eeeee..ee...eehhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhh..ee...ee...........ee..ee..eee....hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---FLAVODOXIN_LIKE  PDB: B:4-164 UniProt: 5-165                                                                                                                     ----- PROSITE (1)
                PROSITE (2) -----FLAVODOXIN       --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5u B   1 AKKIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTWNIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQAGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEFGL 169
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: Flavoproteins (208)

Family: Flavodoxin-related (81)

Protein domain: automated matches (9)

Anabaena sp. [TaxId: 1168] (5)

1a	d2v5ua_	A:
1b	d2v5ub_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.360, no name defined] (150)

Anabaena sp.. Organism_taxid: 1168. Strain: pcc 7119. (5)

1a	2v5uB00	B:1-169
1b	2v5uA00	A:3-169

(no "Pfam Domain" information available for 2V5U)

Asymmetric Unit(hide GO term definitions)

Chain A,B (FLAV_NOSSO | P0A3E0)

molecular function
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0010106	cellular response to iron ion starvation	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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	2v5u
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	FLAV_NOSSO \| P0A3E0	:	1dx9 1ftg 1obo 1obv 1qhe 2kqu 2v5v 3esx 3esy 3esz

1dx9	W57A APOFLAVODOXIN FROM ANABAENA
1ftg	STRUCTURE OF APOFLAVODOXIN: CLOSURE OF A TYROSINE/TRYPTOPHAN AROMATIC GATE LEADS TO A COMPACT FOLD
1obo	W57L FLAVODOXIN FROM ANABAENA
1obv	Y94F FLAVODOXIN FROM ANABAENA
1qhe	ENERGETICS OF A HYDROGEN BOND (CHARGED AND NEUTRAL) AND OF A CATION- PI INTERACTION IN APOFLAVODOXIN
2v5v	W57E FLAVODOXIN FROM ANABAENA

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