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(-) Description

Title :  CRYSTAL STRUCTURE OF CHOLINE BINDING PROTEIN F FROM STREPTOCOCCUS PNEUMONIAE
 
Authors :  J. Hermoso, R. Molina, R. Kahn, M. Stelter
Date :  08 May 07  (Deposition) - 10 Jun 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Cbpf, Choline-Binding-Protein, Lipid-Binding-Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Molina, A. Gonzalez, M. Stelter, I. Perez-Dorado, R. Kahn, M. Morales, S. Campuzano, N. E. Campillo, S. Mobashery, J. L. Garcia, P. Garcia, J. A. Hermoso
Crystal Structure Of Cbpf, A Bifunctional Choline- Binding Protein And Autolysis Regulator From Streptococcus Pneumoniae.
Embo Rep. V. 10 246 2009
PubMed-ID: 19165143  |  Reference-DOI: 10.1038/EMBOR.2008.245

(-) Compounds

Molecule 1 - CHOLINE BINDING PROTEIN F
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE
    Organism Taxid: 171101
    Strain: R6

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric/Biological Unit (1, 7)
No.NameCountTypeFull Name
1CHT7Ligand/IonCHOLINE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:262 , LEU A:292 , ASN A:306BINDING SITE FOR RESIDUE CHT A1313
2AC2SOFTWARETRP A:235 , TYR A:263 , MET A:272 , SER A:289BINDING SITE FOR RESIDUE CHT A1314
3AC3SOFTWAREMET A:231 , SER A:248BINDING SITE FOR RESIDUE CHT A1315
4AC4SOFTWARETRP A:214 , MET A:251 , ASN A:269BINDING SITE FOR RESIDUE CHT A1316
5AC5SOFTWARETRP A:163 , ASN A:228BINDING SITE FOR RESIDUE CHT A1317
6AC6SOFTWARETRP A:130 , TRP A:137 , TYR A:182 , SER A:207BINDING SITE FOR RESIDUE CHT A1318

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2V04)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2V04)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2V04)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2V04)

(-) Exons   (0, 0)

(no "Exon" information available for 2V04)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:311
 aligned with Q8DR52_STRR6 | Q8DR52 from UniProtKB/TrEMBL  Length:338

    Alignment length:311
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337 
         Q8DR52_STRR6    28 NTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALAVNTTVDGYSVNYNGEWVQ 338
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (6)
           Pfam domains (7) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (7)
           Pfam domains (8) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (8)
           Pfam domains (9) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CW_binding_1-2v04A0------------------- Pfam domains (9)
         Sec.struct. author .....eeeee..eeeeee..eeee.eeee..eeee.........eeeeee.........ee...........eeeeee...........eeeee....................eeeee.........eeeee..eeeee.....................eeee...............eeee.........eeee..eeee.........eeeee..eeeee.........eeeee..eeeee........eeeee..eeeee.........eeeee..eeeee.........eee..eee.....ee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v04 A   1 NTTGGRFVDKDNRKYYVKDDHKAIYWHKIDGKTYYFGDIGEMVVGWQYLEIPGTGYRDNLFDNQPVNEIGLQEKWYYFGQDGALLEQTDKQVLEAKTSENTGKVYGEQYPLSAEKRTYYFDNNYAVKTGWIYEDGNWYYLNKLGNFGDDSYNPLPIGEVAKGWTQDFHVTIDIDRSKPAPWYYLDASGKMLTDWQKVNGKWYYFGSSGSMATGWKYVRGKWYYLDNKNGDMKTGWQYLGNKWYYLRSSGAMVTGWYQDGLTWYYLNAGNGDMKTGWFQVNGKWYYAYSSGALAVNTTVDGYSVNYNGEWVQ 311
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2V04)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2V04)

(-) Pfam Domains  (1, 9)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: CW_binding_1] (12)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2V04)

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 Related Entries

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UniProtKB/TrEMBL
        Q8DR52_STRR6 | Q8DR52: 2v05 2vyu 2x8m 2x8o 2x8p

(-) Related Entries Specified in the PDB File

2v05 CRYSTAL STRUCTURE OF CHOLINE BINDING PROTEIN F FROM STREPTOCOCCUS PNEUMONIAE. CRYSTAL FORM II.