2UZ9 - JenaLib

Title :   HUMAN GUANINE DEAMINASE (GUAD) IN COMPLEX WITH ZINC AND ITS PRODUCT XANTHINE.

Authors :   M. Moche, M. Welin, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg-Schiavone, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, T. Nyman, D. Ogg, C. Persson, J. Sagemark, P. Stenmark, M. Sundstrom, A. G. Thorsell, S. Van Den Berg, J. Weigelt, P. Nordlund, Structural Genomics Consortium (Sgc)

Date :   26 Apr 07 (Deposition) - 08 May 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Zinc, Hydrolase, Purine Metabolism, Guanine Aminohydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Moche, M. Welin, C. Arrowsmith, H. Berglund, R. Busam, R. Collins, L. G. Dahlgren, A. Edwards, S. Flodin, A. Flores, S. Graslund, M. Hammarstrom, B. M. Hallberg, L. Holmberg-Schiavone, I. Johansson, A. Kallas, T. Karlberg, T. Kotenyova, L. Lehtio, T. Nyman, D. Ogg, C. Persson, J. Sagemark, P. Stenmark, M. Sundstrom, A. G. Thorsell, S. Van Den Berg, J. Weigelt, P. Nordlund
Human Guanine Deaminase (Guad) In Complex With Zinc And Its Product Xhantine
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (14, 14)

Asymmetric Unit (14, 14)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1d	ENST00000358399	1d	ENSE00001951441	chr9:74764383-74764598	216	GUAD_HUMAN	1-41	41	1	A:8-41	34
1.3a	ENST00000358399	3a	ENSE00001751942	chr9:74810416-74810504	89	GUAD_HUMAN	42-71	30	1	A:42-71	30
1.5	ENST00000358399	5	ENSE00001626863	chr9:74817487-74817658	172	GUAD_HUMAN	71-128	58	1	A:71-128	58
1.6a	ENST00000358399	6a	ENSE00001774554	chr9:74825603-74825690	88	GUAD_HUMAN	129-158	30	1	A:129-158	30
1.7	ENST00000358399	7	ENSE00001706302	chr9:74828802-74828907	106	GUAD_HUMAN	158-193	36	1	A:158-193	36
1.9	ENST00000358399	9	ENSE00001591719	chr9:74834395-74834422	28	GUAD_HUMAN	193-202	10	1	A:193-202	10
1.10	ENST00000358399	10	ENSE00001722211	chr9:74838036-74838143	108	GUAD_HUMAN	203-238	36	1	A:203-238	36
1.11	ENST00000358399	11	ENSE00001672840	chr9:74840593-74840700	108	GUAD_HUMAN	239-274	36	1	A:239-274	36
1.12a	ENST00000358399	12a	ENSE00001749359	chr9:74842859-74842956	98	GUAD_HUMAN	275-307	33	1	A:275-307	33
1.13	ENST00000358399	13	ENSE00002175571	chr9:74846030-74846097	68	GUAD_HUMAN	307-330	24	1	A:307-330	24
1.14	ENST00000358399	14	ENSE00001760403	chr9:74856068-74856214	147	GUAD_HUMAN	330-379	50	1	A:330-379	50
1.15	ENST00000358399	15	ENSE00001767251	chr9:74860064-74860194	131	GUAD_HUMAN	379-422	44	1	A:379-422	44
1.16	ENST00000358399	16	ENSE00001624681	chr9:74862322-74862349	28	GUAD_HUMAN	423-432	10	1	A:423-432	10
1.17c	ENST00000358399	17c	ENSE00001646828	chr9:74863188-74867140	3953	GUAD_HUMAN	432-454	23	1	A:432-451	20

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:444
 aligned with GUAD_HUMAN | Q9Y2T3 from UniProtKB/Swiss-Prot  Length:454

    Alignment length:444
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447    
           GUAD_HUMAN     8 PLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVPFS 451
               SCOP domains d2uz9a1 A:8-75,A:389-451 Guanine deaminase                          d2uz9a2 A:76-388 Guanine deaminase                                                                                                                                                                                                                                                                                       d2uz9a1 A:8-75,A:389-451 Guanine deaminase                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains -----------------------------------------------------------------Amidohydro_1-2uz9A01 A:73-401                                                                                                                                                                                                                                                                                                            -------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.......eeeeeeeeee.....eeeeee..hhhhhhhhhh.hhh.eee.....eeee.eeeeeee.hhhhhh......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeee...hhhhhhhhhhhhhhhh.eeeee...............hhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhh....hhhhhhhhh......eeeee....hhhhhhhhhhhh.eeeehhhhhhhh.....hhhhhhhh..eeee..........hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhh................eeee............hhhhhh...hhhhhhhhhhhhhh.eeeeee..eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1d  PDB: A:8-41            Exon 1.3a  PDB: A:42-71       ---------------------------------------------------------Exon 1.6a  PDB: A:129-158     ----------------------------------Exon 1.9  Exon 1.10  PDB: A:203-238           Exon 1.11  PDB: A:239-274           Exon 1.12a  PDB: A:275-307       ----------------------Exon 1.14  PDB: A:330-379 UniProt: 330-379        -------------------------------------------Exon 1.16 ------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------Exon 1.5  PDB: A:71-128 UniProt: 71-128                   -----------------------------Exon 1.7  PDB: A:158-193            -----------------------------------------------------------------------------------------------------------------Exon 1.13  PDB: A:307-33------------------------------------------------Exon 1.15  PDB: A:379-422 UniProt: 379-422  ---------Exon 1.17c           Transcript 1 (2)
                 2uz9 A   8 PLAHIFRGTFVHSTWTCPMEVLRDHLLGVSDSGKIVFLEEASQQEKLAKEWCFKPCEIRELSHHEFFMPGLVDTHIHASQYSFAGSSIDLPLLEWLTKYTFPAEHRFQNIDFAEEVYTRVVRRTLKNGTTTACYFATIHTDSSLLLADITDKFGQRAFVGKVCMDLNDTFPEYKETTEESIKETERFVSEMLQKNYSRVKPIVTPRFSLSCSETLMGELGNIAKTRDLHIQSHISENRDEVEAVKNLYPSYKNYTSVYDKNNLLTNKTVMAHGCYLSAEELNVFHERGASIAHCPNSNLSLSSGFLNVLEVLKHEVKIGLGTDVAGGYSYSMLDAIRRAVMVSNILLINKVNEKSLTLKEVFRLATLGGSQALGLDGEIGNFEVGKEFDAILINPKASDSPIDLFYGDFFGDISEAVIQKFLYLGDDRNIEEVYVGGKQVVPFS 451
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (12, 12)

Asymmetric Unit(hide GO term definitions)

Chain A (GUAD_HUMAN | Q9Y2T3)

molecular function
	GO:0008892	guanine deaminase activity	Catalysis of the reaction: guanine + H2O = xanthine + NH3.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0006147	guanine catabolic process	The chemical reactions and pathways resulting in the breakdown of guanine, 2-amino-6-hydroxypurine, a purine that is one of the five main bases found in nucleic acids and a component of a number of phosphorylated guanosine derivatives whose metabolic or regulatory functions are important.
	GO:0046098	guanine metabolic process	The chemical reactions and pathways involving guanine, 2-amino-6-hydroxypurine, a purine that is one of the five main bases found in nucleic acids and a component of a number of phosphorylated guanosine derivatives whose metabolic or regulatory functions are important.
	GO:0007399	nervous system development	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
	GO:0006139	nucleobase-containing compound metabolic process	Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
	GO:0006195	purine nucleotide catabolic process	The chemical reactions and pathways resulting in the breakdown of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

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	2uz9
		Family and Domain Information	:	ProDom \| SYSTERS
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	GUAD_HUMAN \| Q9Y2T3
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	3.5.4.3
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