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(-) Description

Title :  1H, 13C, AND 15N CHEMICAL SHIFT ASSIGNMENTS FOR MUSASHI1 RBD1:R(GUAGU) COMPLEX
 
Authors :  T. Ohyama, T. Nagata, K. Tsuda, T. Imai, H. Okano, T. Yamazaki, M. Katahi
Date :  27 Jun 11  (Deposition) - 28 Dec 11  (Release) - 28 Dec 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Musashi, Protein-Rna Complex, Rrm, Rbd, Rna Binding Protein-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Ohyama, T. Nagata, K. Tsuda, N. Kobayashi, T. Imai, H. Okano, T. Yamazaki, M. Katahira
Structure Of Musashi1 In A Complex With Target Rna: The Rol Of Aromatic Stacking Interactions
Nucleic Acids Res. 2011
PubMed-ID: 22140116  |  Reference-DOI: 10.1093/NAR/GKR1139

(-) Compounds

Molecule 1 - RNA-BINDING PROTEIN MUSASHI HOMOLOG 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET15B
    Expression System Vector Type: VECTOR
    Fragment: RRM 1 DOMAIN, UNP RESIDUES 20-103
    Gene: MSI1, MSI1H
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: MUSASHI-1
 
Molecule 2 - RNA (5'-R(*GP*UP*AP*GP*U)-3')
    Chains: B
    Engineered: YES
    Other Details: SYNTHETIC RNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2RS2)

(-) Sites  (0, 0)

(no "Site" information available for 2RS2)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RS2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RS2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RS2)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.MSI1H_MOUSE20-110
109-186		  1A:20-103
-
NMR Structure * (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RRMPS50102 Eukaryotic RNA Recognition Motif (RRM) profile.MSI1H_MOUSE20-110
109-186		  1A:20-103
-

(-) Exons   (0, 0)

(no "Exon" information available for 2RS2)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:84
 aligned with MSI1H_MOUSE | Q61474 from UniProtKB/Swiss-Prot  Length:362

    Alignment length:84
                                    29        39        49        59        69        79        89        99    
          MSI1H_MOUSE    20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPK 103
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......hhhhhhhhhh....eeeeee............eeeee.hhhhhhhhhhh..eee..eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE RRM  PDB: A:20-103 UniProt: 20-110                                                   PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 2rs2 A  20 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPK 103
                                    29        39        49        59        69        79        89        99    


Chain B from PDB  Type:RNA  Length:5
                                     
                 2rs2 B 104 GUAGU 108
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RS2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2RS2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2RS2)

(-) Gene Ontology  (9, 9)

NMR Structure(hide GO term definitions)
Chain A   (MSI1H_MOUSE | Q61474)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0008266    poly(U) RNA binding    Interacting selectively and non-covalently with a sequence of uracil residues in an RNA molecule.
    GO:0003727    single-stranded RNA binding    Interacting selectively and non-covalently with single-stranded RNA.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0005844    polysome    A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.

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  2rs2
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  MSI1H_MOUSE | Q61474
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MSI1H_MOUSE | Q61474: 1uaw 2mss 2mst

(-) Related Entries Specified in the PDB File

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