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(-) Description

Title :  SOLUTION STRUCTURE OF POLYTHEONAMIDE B
 
Authors :  N. Hamada, S. Matsunaga, M. Fujiwara, K. Fujjita, H. Hirota, R. Schmuck P. Guntert, N. Fusetani
Date :  03 Sep 09  (Deposition) - 15 Sep 10  (Release) - 24 Aug 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Beta-Helix, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Hamada, S. Matsunaga, M. Fujiwara, K. Fujita, H. Hirota, R. Schmucki, P. Guntert, N. Fusetani
Solution Structure Of Polytheonamide B, A Highly Cytotoxic Nonribosomal Polypeptide From Marine Sponge
J. Am. Chem. Soc. 2010
PubMed-ID: 20795624  |  Reference-DOI: 10.1021/JA104616Z

(-) Compounds

Molecule 1 - POLYTHEONAMIDE B
    Chains: A
    Organism Scientific: THEONELLA SWINHOEI
    Organism Taxid: 73791

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (14, 28)

NMR Structure (14, 28)
No.NameCountTypeFull Name
12TL1Mod. Amino AcidD-ALLOTHREONINE
2DAL1Mod. Amino AcidD-ALANINE
3DHV2Mod. Amino Acid3-HYDROXY-D-VALINE
4DSG2Mod. Amino AcidD-ASPARAGINE
5DSN1Mod. Amino AcidD-SERINE
6HTN2Mod. Amino Acid(3R)-3-HYDROXY-N-METHYL-D-ASPARAGINE
7HVA1Mod. Amino Acid3-HYDROXY-L-VALINE
8I2M1Mod. Amino Acid3-METHYL-L-ALLOISOLEUCINE
9LMQ1Mod. Amino Acid(3S)-3-METHYL-L-GLUTAMINE
10M2S1Mod. Amino Acid3-{[(R)-METHYLSULFINYL]METHYL}-L-VALINE
11MHE1Mod. Amino Acid5,5-DIMETHYL-2-OXOHEXANOIC ACID
12MND6Mod. Amino AcidN-METHYL-D-ASPARAGINE
13TBG5Mod. Amino Acid3-METHYL-L-VALINE
14TDD3Mod. Amino Acid(2R)-2-AMINO-3,3-DIMETHYL-BUTANOIC ACID
NMR Structure * (14, 28)
No.NameCountTypeFull Name
12TL1Mod. Amino AcidD-ALLOTHREONINE
2DAL1Mod. Amino AcidD-ALANINE
3DHV2Mod. Amino Acid3-HYDROXY-D-VALINE
4DSG2Mod. Amino AcidD-ASPARAGINE
5DSN1Mod. Amino AcidD-SERINE
6HTN2Mod. Amino Acid(3R)-3-HYDROXY-N-METHYL-D-ASPARAGINE
7HVA1Mod. Amino Acid3-HYDROXY-L-VALINE
8I2M1Mod. Amino Acid3-METHYL-L-ALLOISOLEUCINE
9LMQ1Mod. Amino Acid(3S)-3-METHYL-L-GLUTAMINE
10M2S1Mod. Amino Acid3-{[(R)-METHYLSULFINYL]METHYL}-L-VALINE
11MHE1Mod. Amino Acid5,5-DIMETHYL-2-OXOHEXANOIC ACID
12MND6Mod. Amino AcidN-METHYL-D-ASPARAGINE
13TBG5Mod. Amino Acid3-METHYL-L-VALINE
14TDD3Mod. Amino Acid(2R)-2-AMINO-3,3-DIMETHYL-BUTANOIC ACID

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:49
                                                                                
               SCOP domains ------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author ................................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                  2rqo A  0 xGxGxxxxxxAGAxAxxGAGxxxxAGGxIxxxGxIxVxAxVxVxxxQxT 48
                            | | |||||9   | || 19||||   |29|| | | |39 | ||| | 
                            | | ||||||   | 16-HVA|||   | ||| | | | | | 44-M2S
                            0-MHE|||||   | |   20-TBG  | ||| | | | | | |45-DSG
                              2-I2M|||   | |    21-MND | ||| | | | | | |  47-2TL
                                4-TBG|   | |     22-LMQ| ||| | | | | | |     
                                 5-TDD   | |      23-DHV ||| | | | | | |     
                                  6-TBG  | |          27-MND | | | | | |     
                                   7-DAL | |            29-HTN | | | | |     
                                    8-TBG| |             30-TBG| | | | |     
                                     9-TDD |              31-DHV | | | |
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 Classification and Annotation

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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