2RFQ - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF 3-HSA HYDROXYLASE FROM RHODOCOCCUS SP. RHA1

Authors :   C. Chang, T. Skarina, O. Kagan, A. Savchenko, A. M. Edwards, A. Joachimi Midwest Center For Structural Genomics (Mcsg)

Date :   01 Oct 07 (Deposition) - 16 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   3-Hsa Hydroxylase, Rhodococcus Sp. Rha1, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Chang, T. Skarina, O. Kagan, A. Savchenko, A. M. Edwards, A. Joachimiak
Crystal Structure Of 3-Hsa Hydroxylase, Oxygenase From Rhodococcus Sp. Rha1.
To Be Published
PubMed: search

Molecule 1 - 3-HSA HYDROXYLASE, OXYGENASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET DERIVATIVE
	Expression System Strain	:	BL21(DE3) DERIVATIVE
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	HSAA, RHA1_RO04539
	Organism Scientific	:	RHODOCOCCUS SP.
	Organism Taxid	:	101510
	Strain	:	RHA1

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 45)

No.	Name	Count	Type	Full Name
1	1PS	13	Ligand/Ion	3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
2	MSE	32	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	VAL C:161 , ASP C:162 , PHE C:163 , SER C:206 , LYS C:208 , HOH C:554 , HOH C:704 , HOH C:768	BINDING SITE FOR RESIDUE 1PS C 392
02	AC2	SOFTWARE	VAL D:161 , ASP D:162 , PHE D:163 , SER D:206 , LYS D:208 , HOH D:460 , HOH D:768 , HOH D:795	BINDING SITE FOR RESIDUE 1PS D 392
03	AC3	SOFTWARE	SER C:97 , TYR C:130 , THR C:201 , HIS C:202 , VAL C:204 , HOH C:560 , HOH C:602	BINDING SITE FOR RESIDUE 1PS D 393
04	AC4	SOFTWARE	HIS A:256 , THR A:344 , PRO A:351 , LEU A:352 , HOH A:446	BINDING SITE FOR RESIDUE 1PS A 392
05	AC5	SOFTWARE	ASP C:127 , PHE C:198	BINDING SITE FOR RESIDUE 1PS C 393
06	AC6	SOFTWARE	ARG A:170 , TYR A:173 , ARG A:174 , ILE A:175 , HOH A:525	BINDING SITE FOR RESIDUE 1PS A 393
07	AC7	SOFTWARE	ARG C:170 , TYR C:173 , ARG C:174 , ILE C:175 , HOH C:420 , HOH C:731	BINDING SITE FOR RESIDUE 1PS C 394
08	AC8	SOFTWARE	HIS B:256 , THR B:344 , PRO B:351 , LEU B:352 , HOH B:410	BINDING SITE FOR RESIDUE 1PS B 392
09	AC9	SOFTWARE	HIS C:256 , THR C:344 , PRO C:351 , LEU C:352 , HOH C:462	BINDING SITE FOR RESIDUE 1PS C 395
10	BC1	SOFTWARE	ARG D:170 , TYR D:173 , ARG D:174 , ILE D:175 , HOH D:458 , HOH D:569	BINDING SITE FOR RESIDUE 1PS D 394
11	BC2	SOFTWARE	GLU B:8 , GLY B:56 , TYR B:58	BINDING SITE FOR RESIDUE 1PS B 394
12	BC3	SOFTWARE	GLY D:56 , TYR D:58	BINDING SITE FOR RESIDUE 1PS D 395

(no "SS Bond" information available for 2RFQ)

(no "Cis Peptide Bond" information available for 2RFQ)

(no "SAP(SNP)/Variant" information available for 2RFQ)

(no "PROSITE Motif" information available for 2RFQ)

(no "Exon" information available for 2RFQ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:388
 aligned with HSAA_RHOJR | Q0S811 from UniProtKB/Swiss-Prot  Length:382

    Alignment length:388
                                  1                                                                                                                                                                                                                                                                                                                                                                                                
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374        
           HSAA_RHOJR     - ------MQRLDALLPTLRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGLPITDTMV 382
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rfqA01 A:4-111 Butyryl-Coa Dehydrogenase, subunit A, domain 1                                              2rfqA02 A:112-206 Butyryl-CoA Dehydrogenase, subunit A, domain 2                               2rfqA03 A:207-391 Butyryl-CoA Dehydrogenase, subunit A, domain 3                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh......eeee....eeeeee..eeeeeeeeeee.hhhhh.eeeeeeeeee..eeeeeeeeeee.hhheee.......hhhhh.eeeeeeeeeee...eeehhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rfq A   4 HDSHEVmQRLDALLPTLRERAQETEDLRRIPDDSmKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYAPmGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAmSNLTAPGLERNTAPVYKmPWGTIHPTTISAPIVGmAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVmYGTGEFGLPITDTmV 391
                                  | 13        23        33    |   43        53        63        73        83        93       103       113      |123       133       143       153       163       173       183       193       203      |213       223    |  233       243 |     253       263       273       283       293       303       313       323       333       343       353       363       373  |    383      | 
                                 10-MSE                      38-MSE                                                                           120-MSE                                                                                   210-MSE           228-MSE          245-MSE                                                                                                                            376-MSE       390-MSE

Chain B from PDB  Type:PROTEIN  Length:387
 aligned with HSAA_RHOJR | Q0S811 from UniProtKB/Swiss-Prot  Length:382

    Alignment length:389
                                   1                                                                                                                                                                                                                                                                                                                                                                                                
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373         
           HSAA_RHOJR     - -------MQRLDALLPTLRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGLPITDTMV 382
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rfqB01 B:3-111 Butyryl-Coa Dehydrogenase, subunit A, domain 1                                               2rfqB02 B:112-206 Butyryl-CoA Dehydrogenase, subunit A, domain 2                               2rfqB03 B:207-391 Butyryl-CoA Dehydrogenase, subunit A, doma  in 3                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh......eeee....eeeeee..eeeeeeeeeee.hhhhh.eeeeeeeeee..eeeeeeeeeee.hhheee.......hhhhh.eeeeeeeeeee...eeehhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..--....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rfq B   3 DHDSHEVmQRLDALLPTLRERAQETEDLRRIPDDSmKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYAPmGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAmSNLTAPGLERNTAPVYKmPWGTIHPTTISAPIVGmAYGAYDAHVEHQGKRVRAAFA--KAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVmYGTGEFGLPITDTmV 391
                                   |12        22        32     |  42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222     | 232       242  |    252       262   |  |272       282       292       302       312       322       332       342       352       362       372   |   382       | 
                                  10-MSE                      38-MSE                                                                           120-MSE                                                                                   210-MSE           228-MSE          245-MSE              266  |                                                                                                        376-MSE       390-MSE
                                                                                                                                                                                                                                                                                                    269

Chain C from PDB  Type:PROTEIN  Length:378
 aligned with HSAA_RHOJR | Q0S811 from UniProtKB/Swiss-Prot  Length:382

    Alignment length:388
                                  1                                                                                                                                                                                                                                                                                                                                                                                                
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374        
           HSAA_RHOJR     - ------MQRLDALLPTLRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGLPITDTMV 382
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rfqC01 C:4-111 Butyryl-Coa Dehydrogenase, subunit A, domain 1                                              2rfqC02 C:112-206 Butyryl-CoA Dehydrogenase, subunit A, domain 2                               2rfqC03 C:207-391 Butyryl-CoA Dehydrogenase, subunit A,           domain 3                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh......eeee....eeeeee..eeeeeeeeeee.hhhhh.eeeeeeeeee..eeeeeeeeeee.hhheee.......hhhhh.eeeeeeeeeee...eeehhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh----------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rfq C   4 HDSHEVmQRLDALLPTLRERAQETEDLRRIPDDSmKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYAPmGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAmSNLTAPGLERNTAPVYKmPWGTIHPTTISAPIVGmAYGAYDAHVEHQGKRV----------DDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVmYGTGEFGLPITDTmV 391
                                  | 13        23        33    |   43        53        63        73        83        93       103       113      |123       133       143       153       163       173       183       193       203      |213       223    |  233       243 |     253       | -       273       283       293       303       313       323       333       343       353       363       373  |    383      | 
                                 10-MSE                      38-MSE                                                                           120-MSE                                                                                   210-MSE           228-MSE          245-MSE         261        272                                                                                                     376-MSE       390-MSE

Chain D from PDB  Type:PROTEIN  Length:379
 aligned with HSAA_RHOJR | Q0S811 from UniProtKB/Swiss-Prot  Length:382

    Alignment length:388
                                  1                                                                                                                                                                                                                                                                                                                                                                                                
                                  |  4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374        
           HSAA_RHOJR     - ------MQRLDALLPTLRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVMYGTGEFGLPITDTMV 382
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rfqD01 D:4-111 Butyryl-Coa Dehydrogenase, subunit A, domain 1                                              2rfqD02 D:112-206 Butyryl-CoA Dehydrogenase, subunit A, domain 2                               2rfqD03 D:207-391 Butyryl-CoA Dehydrogenase, subunit A,          domain 3                                                                                                                 CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhh....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhh......eeee....eeeeee..eeeeeeeeeee.hhhhh.eeeeeeeeee..eeeeeeeeeee.hhheee.......hhhhh.eeeeeeeeeee...eeehhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rfq D   4 HDSHEVmQRLDALLPTLRERAQETEDLRRIPDDSmKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIGVHNWHLALFSQQAQEDVWGNDTDVRISSSYAPmGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPREDYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAmSNLTAPGLERNTAPVYKmPWGTIHPTTISAPIVGmAYGAYDAHVEHQGKRVR---------DDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVRATGRAISSIDKLFESSGATALANGTPLQRFWRDAHAGRVHAANDPERAYVmYGTGEFGLPITDTmV 391
                                  | 13        23        33    |   43        53        63        73        83        93       103       113      |123       133       143       153       163       173       183       193       203      |213       223    |  233       243 |     253        |-       273       283       293       303       313       323       333       343       353       363       373  |    383      | 
                                 10-MSE                      38-MSE                                                                           120-MSE                                                                                   210-MSE           228-MSE          245-MSE          262       272                                                                                                     376-MSE       390-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2RFQ)

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Butyryl-Coa Dehydrogenase, subunit A; domain 1 (28)

Homologous Superfamily: Butyryl-Coa Dehydrogenase, subunit A, domain 1 (28)

Rha1 (Rhodococcus sp) (2)

1a	2rfqB01	B:3-111
1b	2rfqA01	A:4-111
1c	2rfqC01	C:4-111
1d	2rfqD01	D:4-111

Architecture: Up-down Bundle (3216)

Topology: Butyryl-CoA Dehydrogenase, subunit A; domain 3 (76)

Homologous Superfamily: Butyryl-CoA Dehydrogenase, subunit A, domain 3 (37)

Rha1 (Rhodococcus sp) (2)

2a	2rfqC03	C:207-391
2b	2rfqD03	D:207-391
2c	2rfqB03	B:207-391
2d	2rfqA03	A:207-391

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Butyryl-CoA Dehydrogenase, subunit A; domain 2 (35)

Homologous Superfamily: Butyryl-CoA Dehydrogenase, subunit A, domain 2 (35)

Rha1 (Rhodococcus sp) (2)

3a	2rfqA02	A:112-206
3b	2rfqB02	B:112-206
3c	2rfqC02	C:112-206
3d	2rfqD02	D:112-206

(no "Pfam Domain" information available for 2RFQ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (HSAA_RHOJR | Q0S811)

molecular function
	GO:0036383	3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione monooxygenase activity	Catalysis of the reaction: 3-hydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + FMNH2 + O2 = 3,4-dihydroxy-9,10-secoandrosta-1,3,5(10)-triene-9,17-dione + FMN + H2O.
	GO:0050660	flavin adenine dinucleotide binding	Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
	GO:0019439	aromatic compound catabolic process	The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring.
	GO:0016042	lipid catabolic process	The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006694	steroid biosynthetic process	The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
	GO:0008202	steroid metabolic process	The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2rfq)

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Access by PDB/NDB ID
	2rfq
		Family and Domain Information	:	ProDom \| SYSTERS
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	HSAA_RHOJR \| Q0S811
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	HSAA_RHOJR \| Q0S811
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 45)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

CATH Domains (3, 12)

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Gene Ontology (12, 12)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File