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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE SPORE COAT PROTEIN (BH2358) FROM BACILLUS HALODURANS C-125 AT 1.54 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  18 Sep 07  (Deposition) - 02 Oct 07  (Release) - 28 Jul 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.54
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Putative Spore Coat Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Domain With Unknown Function And A Ferritin-Like Fold (Np_243224. 1) From Bacillus Halodurans A 1. 54 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BH2358 PROTEIN
    Atcc: BAA-125
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_243224.1, BH2358
    Organism Scientific: BACILLUS HALODURANS C-125
    Organism Taxid: 272558
    Strain: C-125, DSM 18197, FERM 7344, JCM 9153

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 13)

Asymmetric Unit (2, 13)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2PG43Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (2, 26)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
2PG46Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR B:24 , THR B:27 , ASN B:28 , LEU B:31 , ALA B:57 , GLU B:61 , ASP B:109 , LYS B:140 , PHE B:143 , HOH B:196BINDING SITE FOR RESIDUE PG4 B 171
2AC2SOFTWARETYR A:24 , THR A:27 , ASN A:28 , ALA A:57 , GLU A:61 , ASP A:109 , LYS A:140 , PHE A:143 , HOH A:254 , HOH A:261BINDING SITE FOR RESIDUE PG4 A 171
3AC3SOFTWAREVAL A:115 , GLN A:119 , HOH A:219 , HOH A:315 , HOH A:354 , HOH A:388 , GLN B:119 , HOH B:267BINDING SITE FOR RESIDUE PG4 A 172

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2RBD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RBD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RBD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RBD)

(-) Exons   (0, 0)

(no "Exon" information available for 2RBD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
 aligned with Q9KAD1_BACHD | Q9KAD1 from UniProtKB/TrEMBL  Length:170

    Alignment length:159
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156         
         Q9KAD1_BACHD     7 NPQDEPLHYGEVFSTWTYLSTNNGLINGYRSFINHTGDEDLKNLIDEAIQAMQDENHQLEELLRSNGVGLPPAPPDRPAARLDDIPVGARFNDPEISATISMDVAKGLVTCSQIIGQSIREDVALMFSQFHMAKVQFGGKMLKLNKNKGWLIPPPLHSD 165
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2rbdA01 A:7-156  [code=1.20.1260.10, no name defined]                                                                                                 --------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rbd A   7 NPQDEPLHYGEVFSTWTYLSTNNGLINGYRSFINHTGDEDLKNLIDEAIQAmQDENHQLEELLRSNGVGLPPAPPDRPAARLDDIPVGARFNDPEISATISmDVAKGLVTCSQIIGQSIREDVALmFSQFHmAKVQFGGKmLKLNKNKGWLIPPPLHSD 165
                                    16        26        36        46        56 |      66        76        86        96       106 |     116       126     | 136 |     146|      156         
                                                                              58-MSE                                           108-MSE                 132-MSE |      147-MSE              
                                                                                                                                                             138-MSE                       


Chain B from PDB  Type:PROTEIN  Length:156
 aligned with Q9KAD1_BACHD | Q9KAD1 from UniProtKB/TrEMBL  Length:170

    Alignment length:156
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159      
         Q9KAD1_BACHD    10 DEPLHYGEVFSTWTYLSTNNGLINGYRSFINHTGDEDLKNLIDEAIQAMQDENHQLEELLRSNGVGLPPAPPDRPAARLDDIPVGARFNDPEISATISMDVAKGLVTCSQIIGQSIREDVALMFSQFHMAKVQFGGKMLKLNKNKGWLIPPPLHSD 165
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2rbdB01 B:10-156  [code=1.20.1260.10, no name defined]                                                                                             --------- CATH domains
           Pfam domains (1) DUF3231-2rbdB01 B:10-165                                                                                                                                     Pfam domains (1)
           Pfam domains (2) DUF3231-2rbdB02 B:10-165                                                                                                                                     Pfam domains (2)
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2rbd B  10 DEPLHYGEVFSTWTYLSTNNGLINGYRSFINHTGDEDLKNLIDEAIQAmQDENHQLEELLRSNGVGLPPAPPDRPAARLDDIPVGARFNDPEISATISmDVAKGLVTCSQIIGQSIREDVALmFSQFHmAKVQFGGKmLKLNKNKGWLIPPPLHSD 165
                                    19        29        39        49        59        69        79        89        99       109       119       129  |    139       149       159      
                                                                           58-MSE                                           108-MSE                 132-MSE |      147-MSE              
                                                                                                                                                          138-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RBD)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF3231] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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