Chain A from PDB Type:PROTEIN Length:114
aligned with Q74DN1_GEOSL | Q74DN1 from UniProtKB/TrEMBL Length:772
Alignment length:142
40
39 |
12 22 32 | 41 51 61 71 81 91 101 111 121 131 141
Q74DN1_GEOSL 3 GSLVTYLKKCAASVLGAPYTLLCRLLPRITADLRYGS-GYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARD 143
SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains 2 r78A00 A:5-118 [code=3.30.450.20, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .----------------------------..hhhhhhhhhhhhhhhh..eeeee.....eeeehhhhhhhhh.hhhhhh.............hhhhhhhhhhhh...eeeeeeee.....eeeeeeeeee.....eeeeee. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2r78 A 5 G----------------------------TENLYFQSNAYRALFEHAIDGIFImDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARD 118
| - - 6 16 26 | 36 46 56 66 76 86 96 106 116
| 6 30-MSE
5
Chain B from PDB Type:PROTEIN Length:115
aligned with Q74DN1_GEOSL | Q74DN1 from UniProtKB/TrEMBL Length:772
Alignment length:143
40
39 |
12 22 32 | 41 51 61 71 81 91 101 111 121 131 141
Q74DN1_GEOSL 3 GSLVTYLKKCAASVLGAPYTLLCRLLPRITADLRYGS-GYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDV 144
SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains 2 r78B00 B:5-119 [code=3.30.450.20, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .----------------------------..hhhhhhhhhhhhhhhh..eeeee.....eeeehhhhhhhhh.hhhhhh.............hhhhhhhhhhhh...eeeeeeee.....eeeeeeeeee.....eeeeeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2r78 B 5 G----------------------------TENLYFQSNAYRALFEHAIDGIFImDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDV 119
| - - 6 16 26 | 36 46 56 66 76 86 96 106 116
5 6 30-MSE
Chain C from PDB Type:PROTEIN Length:116
aligned with Q74DN1_GEOSL | Q74DN1 from UniProtKB/TrEMBL Length:772
Alignment length:129
40
39 |
26 36 | | 45 55 65 75 85 95 105 115 125 135
Q74DN1_GEOSL 17 LGAPYTLLCRLLPRITADLRYGS-GYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDV 144
SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains 2r 78C00 C:4-119 [code=3.30.450.20, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..-------------..hhhhhhhhhhhhhhhh..eeeee.....eeeehhhhhhhhh.hhhhhh.............hhhhhhhhhhhh...eeeeeeee.....eeeeeeeeee.....eeeeeeee Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
2r78 C 4 LG-------------TENLYFQSNAYRALFEHAIDGIFImDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDV 119
| - | 10 20 30 40 50 60 70 80 90 100 110
5 6 30-MSE
Chain D from PDB Type:PROTEIN Length:115
aligned with Q74DN1_GEOSL | Q74DN1 from UniProtKB/TrEMBL Length:772
Alignment length:143
40
39 |
12 22 32 | 41 51 61 71 81 91 101 111 121 131 141
Q74DN1_GEOSL 3 GSLVTYLKKCAASVLGAPYTLLCRLLPRITADLRYGS-GYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDV 144
SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains 2 r78D00 D:5-119 [code=3.30.450.20, no name defined] CATH domains
Pfam domains (1) -----------------------------------------------PAS_9-2r78D01 D:24-119 Pfam domains (1)
Pfam domains (2) -----------------------------------------------PAS_9-2r78D02 D:24-119 Pfam domains (2)
Pfam domains (3) -----------------------------------------------PAS_9-2r78D03 D:24-119 Pfam domains (3)
Pfam domains (4) -----------------------------------------------PAS_9-2r78D04 D:24-119 Pfam domains (4)
Sec.struct. author .----------------------------..hhhhhhhhhhhhhhhh..eeeee.....eeeehhhhhhhhh.hhhhhh.............hhhhhhhhhhhh...eeeeeeee.....eeeeeeeeee.....eeeeeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
2r78 D 5 G----------------------------TENLYFQSNAYRALFEHAIDGIFImDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEPLREERTVWTRNGDQLTVELSAHLLPDGKILGIARDV 119
| - - 6 16 26 | 36 46 56 66 76 86 96 106 116
5 6 30-MSE
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |