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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ATPASE (CHU_0153) FROM CYTOPHAGA HUTCHINSONII ATCC 33406 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  30 Aug 07  (Deposition) - 18 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Putative Atpase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Atpase (Yp_676785. 1) From Cytophaga Hutchinsonii Atcc 33406 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_676785.1, CHU_0153
    Organism Scientific: CYTOPHAGA HUTCHINSONII ATCC 33406
    Organism Taxid: 269798
    Strain: NCIMB 9469

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 22)

Asymmetric/Biological Unit (3, 22)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2PG411Ligand/IonTETRAETHYLENE GLYCOL
3PO41Ligand/IonPHOSPHATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:13 , ASN A:212 , ASP A:213 , GLU A:216 , GLY A:248 , LYS A:324 , PG4 A:341 , HOH A:391BINDING SITE FOR RESIDUE PO4 A 331
02AC2SOFTWAREGLU A:51 , LYS A:178 , HIS A:180 , ASN A:298 , THR A:314 , HOH A:427BINDING SITE FOR RESIDUE PG4 A 332
03AC3SOFTWARELYS A:290 , ILE A:327 , PG4 A:338BINDING SITE FOR RESIDUE PG4 A 333
04AC4SOFTWAREGLY A:0 , THR A:225 , ILE A:226 , SER A:227 , TYR A:283 , HOH A:358BINDING SITE FOR RESIDUE PG4 A 334
05AC5SOFTWAREMSE A:275 , ASN A:279 , GLU A:287 , ASP A:288 , PG4 A:339BINDING SITE FOR RESIDUE PG4 A 335
06AC6SOFTWAREASN A:200 , GLU A:216 , ASN A:219 , GLY A:248 , GLU A:250BINDING SITE FOR RESIDUE PG4 A 336
07AC7SOFTWAREASP A:70 , LYS A:207 , THR A:320 , ARG A:323BINDING SITE FOR RESIDUE PG4 A 337
08AC8SOFTWARELYS A:290 , LEU A:322 , PG4 A:333BINDING SITE FOR RESIDUE PG4 A 338
09AC9SOFTWAREILE A:21 , ASN A:36 , MSE A:275 , GLU A:291 , PG4 A:335BINDING SITE FOR RESIDUE PG4 A 339
10BC1SOFTWARELYS A:186 , GLU A:236 , GLU A:246 , TYR A:247BINDING SITE FOR RESIDUE PG4 A 340
11BC2SOFTWAREGLU A:8 , TYR A:13 , PO4 A:331BINDING SITE FOR RESIDUE PG4 A 341
12BC3SOFTWAREVAL A:53 , GLY A:55 , ALA A:57 , LYS A:58 , LEU A:184BINDING SITE FOR RESIDUE PG4 A 342

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R44)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:148 -Pro A:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R44)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R44)

(-) Exons   (0, 0)

(no "Exon" information available for 2R44)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:330
 aligned with Q11YS1_CYTH3 | Q11YS1 from UniProtKB/TrEMBL  Length:330

    Alignment length:330
                             1                                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329
         Q11YS1_CYTH3     - -MELKSAEEKSLYYRNKIKEVIDEVGKVVVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRIILNYEAEAEGISTRQIIETILRKVNITK 329
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2r44A01 A:0-27              2r44A02 A:28-194 P-loop containing nucleotide triphosphate hydrolases                                                                                                  -------------2r44A03 A:208-325 putative atpase (yp_676785.1)                                                                       ---- CATH domains
               Pfam domains -----------------------------------------------AAA_3-2r44A01 A:47-177                                                                                                             -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh...eeeee.....hhhhhheeeeee....eeeeee......eeeeehhhhhhhhhhhhhhhhhhhheeee..eeee.....eeeeee...........hhhhhh...eeee....hhhhhhhhhhhhhh...........hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhheee..hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh...eehhhhhhh..hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2r44 A   0 GmELKSAEEKSLYYRNKIKEVIDEVGKVVVGQKYmINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTmDLDFHRIQFTPDLLPSDLIGTmIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECmQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFmmKIHLTYLDKESELEVmRRVSNmNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAmAFFNNRDYVLPEDIKEVAYDILNHRIILNYEAEAEGISTRQIIETILRKVNITK 329
                             |       9        19        29    |   39        49        59        69        79        89 |      99       109       119       129  |    139       149       159       169      |179       189   |   199       209       219       229       239       249       259       269     | 279       289       299       309       319       329
                             |                               34-MSE                             69-MSE                91-MSE                                  132-MSE                                     176-MSE          193-MSE |                                                                         275-MSE                                                  
                             1-MSE                                                                                                                                                                         177-MSE               199-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2R44)

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q11YS1_CYTH3 | Q11YS1)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

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