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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PROTEIN OF UNKNOWN FUNCTION FROM ENTEROCOCCUS FAECALIS
 
Authors :  Y. Kim, H. Li, S. Moy, A. Joachimiak, Midwest Center For Structural (Mcsg)
Date :  30 Aug 07  (Deposition) - 11 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.90
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (2x)
Biol. Unit 2:  A,B,C,D  (1x)
Biol. Unit 3:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Alpha-Beta Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, H. Li, S. Moy, A. Joachimiak
Crystal Structure Of The Protein Of Unknown Function From Enterococcus Faecalis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: 700802
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: EF_0819
    Organism Scientific: ENTEROCOCCUS FAECALIS
    Organism Taxid: 226185
    Strain: V583

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): ABCD
Biological Unit 2 (1x): ABCD
Biological Unit 3 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 5)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 2R41)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R41)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2R41)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R41)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R41)

(-) Exons   (0, 0)

(no "Exon" information available for 2R41)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with Q837L7_ENTFA | Q837L7 from UniProtKB/TrEMBL  Length:107

    Alignment length:103
                                    12        22        32        42        52        62        72        82        92       102   
         Q837L7_ENTFA     3 ERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTVHFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEML 105
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeehhhhh..hhhhhhhhhhhhhhhh........eeeeeeeee..eeeeeee.......eeeeeeee.......eeeeee....eeeehhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 2r41 A   3 ERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTVHFSQENSSVEmAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEmL 105
                                    12        22        32        42        52        62        72        82        92       102 | 
                                                                                               71-MSE                          104-MSE


Chain B from PDB  Type:PROTEIN  Length:104
 aligned with Q837L7_ENTFA | Q837L7 from UniProtKB/TrEMBL  Length:107

    Alignment length:104
                                    10        20        30        40        50        60        70        80        90       100    
         Q837L7_ENTFA     1 MFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTVHFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEM 104
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeehhhhh..hhhhhhhhhhhhhhhh........eeeeeeeee..eeeeeeee......eeeeeeee.......eeeeee...eeeeehhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2r41 B   1 mFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTVHFSQENSSVEmAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEm 104
                            |       10        20        30        40        50        60        70|       80        90       100   |
                            |                                                                    71-MSE                          104-MSE
                            1-MSE                                                                                                   


Chain C from PDB  Type:PROTEIN  Length:106
 aligned with Q837L7_ENTFA | Q837L7 from UniProtKB/TrEMBL  Length:107

    Alignment length:106
                                    10        20        30        40        50        60        70        80        90       100      
         Q837L7_ENTFA     1 MFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTVHFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEMLE 106
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeehhhhhh..hhhhhhhhhhhhhhhh........eeeeeeeee..eeeeeee......eeeeeeeee.......eeeeee...eeeeehhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 2r41 C   1 mFERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTVHFSQENSSVEmAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEmLE 106
                            |       10        20        30        40        50        60        70|       80        90       100   |  
                            |                                                                    71-MSE                          104-MSE
                            1-MSE                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:104
 aligned with Q837L7_ENTFA | Q837L7 from UniProtKB/TrEMBL  Length:107

    Alignment length:104
                                    11        21        31        41        51        61        71        81        91       101    
         Q837L7_ENTFA     2 FERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTVHFSQENSSVEMAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEML 105
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------DUF960-2r41D01 D:10-103                                                                       -- Pfam domains (1)
           Pfam domains (2) --------DUF960-2r41D02 D:10-103                                                                       -- Pfam domains (2)
           Pfam domains (3) --------DUF960-2r41D03 D:10-103                                                                       -- Pfam domains (3)
           Pfam domains (4) --------DUF960-2r41D04 D:10-103                                                                       -- Pfam domains (4)
         Sec.struct. author ........eeeehhhhhh..hhhhhhhhhhhhhhhh........eeeeeeeee..eeeeeee.......eeeeeeee.......eeeeee...eeeeehhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 2r41 D   2 FERFDSDRSRYASLGVVSSLPSGLIDSIWLIIDLNLKGVIPLNDLLHFDLLNNNGKVTVHFSQENSSVEmAIDLPFSYSTAYPSRIFAFDDGHRETILLPAEmL 105
                                    11        21        31        41        51        61        71        81        91       101  | 
                                                                                                71-MSE                          104-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2R41)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2R41)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF960] (1)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2R41)

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