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(-) Description

Title :  CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF ZONULAR OCCLUDENS TOXIN FROM NEISSERIA MENINGITIDIS
 
Authors :  J. Osipiuk, S. Patterson, R. Wu, S. Clancy, A. Joachimiak, Midwest Cen Structural Genomics (Mcsg)
Date :  24 Aug 07  (Deposition) - 04 Sep 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.82
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Zonular Occludens Toxin, Structural Genomics, Apc84050. 2, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, S. Patterson, R. Wu, S. Clancy, A. Joachimiak
Crystal Structure Of N-Terminal Domain Of Zonular Occludens Toxin From Neisseria Meningitidis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: NMB1551, NMB1626
    Organism Scientific: NEISSERIA MENINGITIDIS MC58
    Organism Taxid: 122586
    Strain: MC58 / SEROGROUP B

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric Unit (2, 20)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 10)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 10)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (0, 0)

(no "Site" information available for 2R2A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2R2A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2R2A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2R2A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2R2A)

(-) Exons   (0, 0)

(no "Exon" information available for 2R2A)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
 aligned with Q9JRY6_NEIMB | Q9JRY6 from UniProtKB/TrEMBL  Length:367

    Alignment length:191
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190 
         Q9JRY6_NEIMB     1 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMRTLLEWKICADDPVKMASSAFSSIYTLDKKVYDLYES 191
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2r2aA00 A:2-191 P-loop containing nucleotide triphosphate hydrolases                                                                                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.....hhhhhhhhhhhhhhhhh.........eee.........eeee.............ee..hhhhhhhhhhhh..eeee.hhhhh..........hhhhhhhhhh.....eeeeee.hhhhhhhhhhh.eeeeeeeee.....eeeeee.........hhhhheeee.....hhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r2a A   1 mAEICLITGTPGSGKTLKmVSmmANDEmFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDmYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKmGmRTLLEWKICADDPVKmASSAFSSIYTLDKKVYDLYES 191
                            |       10        20 ||    |30        40        50        60        70   |    80        90       100       110       120       130       140       150 | |   160       170       180       190 
                            |                19-MSE    |                                            74-MSE                                                                       152-MSE           170-MSE                 
                            1-MSE               22-MSE |                                                                                                                           154-MSE                                 
                                                 23-MSE|                                                                                                                                                                   
                                                      28-MSE                                                                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:191
 aligned with Q9JRY6_NEIMB | Q9JRY6 from UniProtKB/TrEMBL  Length:367

    Alignment length:191
                             1                                                                                                                                                                                             
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189 
         Q9JRY6_NEIMB     - -MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGMRTLLEWKICADDPVKMASSAFSSIYTLDKKVYDLYE 190
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2r2aB00 B:0-190 P-loop containing nucleotide triphosphate hydrolases                                                                                                                            CATH domains
           Pfam domains (1) ---Zot-2r2aB01 B:3-190                                                                                                                                                                          Pfam domains (1)
           Pfam domains (2) ---Zot-2r2aB02 B:3-190                                                                                                                                                                          Pfam domains (2)
         Sec.struct. author ....eeeee.....hhhhhhhhhhhhhhhhh.........eee.........ee................hhhhhhhhhhhhhhh..eeee.hhhhh..........hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhheeeeeeeee.....eeeeee.........hhhhheeee.....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r2a B   0 AmAEICLITGTPGSGKTLKmVSmmANDEmFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDmYEWIKKPENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKmGmRTLLEWKICADDPVKmASSAFSSIYTLDKKVYDLYE 190
                             |       9        19  ||    29        39        49        59        69    |   79        89        99       109       119       129       139       149  | |  159       169|      179       189 
                             1-MSE            19-MSE    |                                            74-MSE                                                                       152-MSE           170-MSE                
                                                 22-MSE |                                                                                                                           154-MSE                                
                                                  23-MSE|                                                                                                                                                                  
                                                       28-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2R2A)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9JRY6_NEIMB | Q9JRY6)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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