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(-) Description

Title :  CRYSTAL STRUCTURE OF THE UNCHARACTERIZED PROTEIN YFEY FROM ESCHERICHIA COLI
 
Authors :  J. B. Bonanno, M. Gilmore, K. T. Bain, B. Wu, R. Romero, D. Smith, S. Wasse J. M. Sauder, S. K. Burley, S. C. Almo, New York Sgx Research Center Structural Genomics (Nysgxrc)
Date :  16 Aug 07  (Deposition) - 28 Aug 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Bonanno, M. Gilmore, K. T. Bain, B. Wu, R. Romero, D. Smith, S. Wasserman, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of The Uncharacterized Protein Yfey From Escherichia Coli.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN YFEY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: MODIFIED PET26
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 28-191
    Gene: YFEY, B2432, JW2425
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:137 -A:150
2B:137 -B:150

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QZB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QZB)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 2QZB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:145
 aligned with YFEY_ECOLI | P76537 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:153
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188   
           YFEY_ECOLI    39 TKVSEQGVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQGTISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR 191
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qzbA00 A:39-191 protein yfey like domain                                                                                                                 CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..ee..ee.........hhhhhhhhh....eeeeeeeee..eeeeeeeeee..eeeeeee.--....eeee...............hhhhhh......ee..------.eeee......eeeeee...........hhhhhh..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qzb A  39 TKVSEQGVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVING--GTISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKA------AVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR 191
                                    48        58        68        78        88        98|  |   108       118       128       138 |     148       158       168       178       188   
                                                                                       99  |                                   140    147                                            
                                                                                         102                                                                                         


Chain B from PDB  Type:PROTEIN  Length:147
 aligned with YFEY_ECOLI | P76537 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:153
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188   
           YFEY_ECOLI    39 TKVSEQGVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQGTISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR 191
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qzbB00 B:39-191 protein y   fey like domain                                                                                                              CATH domains
           Pfam domains (1) DUF1131-2qzbB01 B:39-191                                                                                                                                  Pfam domains (1)
           Pfam domains (2) DUF1131-2qzbB02 B:39-191                                                                                                                                  Pfam domains (2)
         Sec.struct. author ..ee..ee..ee.....hhhhhhhhh---.eeeeeeeee..eeeeeeeeee..eeeeeeee.-..eeeeee...............hhhhhh......eee...--...eeee......eeeeee...........hhhhhh..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qzb B  39 TKVSEQGVGELTASTPLQEQAIADAL---YRLRSGMKTANGNVVRFFEVMKGDNVAMVINGD-GTISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADG--NRAVECKAEGSQHISYQFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR 191
                                    48        58     |  68        78        88        98 | |   108       118       128       138   |  |148       158       168       178       188   
                                                    64  68                             100 |                                     142  |                                              
                                                                                         102                                        145
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QZB)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF1131] (1)

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