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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF A DESIGNED FULL CONSENSUS ANKYRIN

Authors :   T. Merz

Date :   15 Aug 07 (Deposition) - 13 Nov 07 (Release) - 02 Jul 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym./Biol. Unit : A

Keywords :   Ankyrin Repeat, Repeat Protein, Helix-Turn-Helix-Beta-Turn, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. Merz, S. K. Wetzel, S. Firbank, A. Pluckthun, M. G. Grutter, P. R. E. Mittl
Stabilizing Ionic Interactions In A Full-Consensus Ankyrin Repeat Protein.
J. Mol. Biol. V. 376 232 2008
PubMed-ID: 18155045 | Reference-DOI: 10.1016/J.JMB.2007.11.047

Molecule 1 - ANKYRIN NI3C
	Chains	:	A
	Engineered	:	YES
	Other Details	:	THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
	Synthetic	:	YES

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 4)

No.	Name	Count	Type	Full Name
1	SO4	4	Ligand/Ion	SULFATE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:48 , ARG A:56 , ARG A:89	BINDING SITE FOR RESIDUE SO4 A 167
2	AC2	SOFTWARE	TYR A:81 , ARG A:89 , ARG A:122	BINDING SITE FOR RESIDUE SO4 A 168
3	AC3	SOFTWARE	ARG A:23 , ARG A:56	BINDING SITE FOR RESIDUE SO4 A 169
4	AC4	SOFTWARE	LYS A:68 , LYS A:76 , ASP A:105 , ALA A:108 , LYS A:109 , HOH A:250 , HOH A:270	BINDING SITE FOR RESIDUE SO4 A 170

(no "SS Bond" information available for 2QYJ)

(no "Cis Peptide Bond" information available for 2QYJ)

(no "SAP(SNP)/Variant" information available for 2QYJ)

(no "PROSITE Motif" information available for 2QYJ)

(no "Exon" information available for 2QYJ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:154
                                                                                                                                                                                          
               SCOP domains d2qyja1 A:13-166 Sank e3_5                                                                                                                                 SCOP domains
               CATH domains 2qyjA00 A:13-166  [code=1.25.40.20, no name defined]                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qyj A  13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Designed proteins (167)

Fold: Artificial ankyrin repeat proteins (7)

Superfamily: Artificial ankyrin repeat proteins (7)

Family: Artificial ankyrin repeat proteins (7)

Protein domain: Sank e3_5 (2)

Synthetic construct [TaxId: 32630] (1)

d2qyja1

A:13-166

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Alpha Horseshoe (399)

Topology: Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat (320)

Homologous Superfamily: [code=1.25.40.20, no name defined] (65)

[unclassified] (7)

2qyjA00

A:13-166

(no "Pfam Domain" information available for 2QYJ)

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 2QYJ)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2qyj)

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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CATH Domains (1, 1)

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