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(-) Description

Title :  CRYSTAL STRUCTURE DETERMINATION OF SHEEP METHEMOGLOBIN AT 2.7 ANGSTROM RESOLUTION
 
Authors :  K. Neelagandan, Pon. Sathya Moorthy, M. Balasubramanian, S. Sundaresan, M. N. Ponnuswamy
Date :  03 Aug 07  (Deposition) - 05 Aug 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A,B  (1x)
Biol. Unit 3:  C,D  (1x)
Keywords :  Hemoglobin, Ovis Aries, Hanging Drop, Quarternary Structure, Heme, Iron, Metal-Binding, Polymorphism, Transport, Oxygen Storage, Oxygen Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Neelagandan, Pon. Sathya Moorthy, M. Balasubramanian, S. Sundaresan, M. N. Ponnuswamy
Crystal Structure Determination Of Sheep(Ovis Aries) Methemoglobin At 2. 7 Angstrom Resolution
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEMOGLOBIN SUBUNIT ALPHA-1/2
    ChainsA, C
    Organism CommonSHEEP
    Organism ScientificOVIS ARIES
    Organism Taxid9940
    SynonymHEMOGLOBIN ALPHA-1/2 CHAIN, ALPHA-1/2-GLOBIN
    TissueERYTHROCYTE
 
Molecule 2 - HEMOGLOBIN SUBUNIT BETA
    ChainsB, D
    Organism CommonSHEEP
    Organism ScientificOVIS ARIES
    Organism Taxid9940
    SynonymHEMOGLOBIN BETA CHAIN, BETA-GLOBIN
    TissueERYTHROCYTE

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)ABCD
Biological Unit 2 (1x)AB  
Biological Unit 3 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:42 , PHE A:43 , HIS A:45 , HIS A:58 , LYS A:61 , LEU A:83 , HIS A:87 , LEU A:91 , ASN A:97 , PHE A:98 , HOH A:147 , LYS C:16 , ASP C:116BINDING SITE FOR RESIDUE HEM A 142
2AC2SOFTWAREPHE B:41 , PHE B:42 , HIS B:44 , HIS B:63 , LYS B:66 , SER B:70 , PHE B:71 , HIS B:92 , LEU B:96 , ASN B:102 , PHE B:103 , LEU B:106 , LEU B:141 , HOH B:151BINDING SITE FOR RESIDUE HEM B 147
3AC3SOFTWARETYR C:42 , HIS C:45 , HIS C:58 , LYS C:61 , LEU C:83 , HIS C:87 , LEU C:91 , ASN C:97 , PHE C:98 , LEU C:101 , HOH C:150BINDING SITE FOR RESIDUE HEM C 142
4AC4SOFTWAREPHE D:41 , PHE D:42 , HIS D:44 , PHE D:45 , HIS D:63 , LYS D:66 , SER D:70 , HIS D:92 , LEU D:96 , ASN D:102 , LEU D:106 , HOH D:150BINDING SITE FOR RESIDUE HEM D 147

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QU0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QU0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (10, 20)

Asymmetric Unit (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_HBA_SHEEP_001 *G16DHBA_SHEEP  ---  ---A/CG15D
02UniProtVAR_HBA_SHEEP_002 *G20SHBA_SHEEP  ---  ---A/CG19S
03UniProtVAR_HBB_SHEEP_001 *N49SHBB_SHEEP  ---  ---B/DN50S
04UniProtVAR_HBB_SHEEP_002 *P57AHBB_SHEEP  ---  ---B/DP58A
05UniProtVAR_HBA_SHEEP_003 *D76YHBA_SHEEP  ---  ---A/CD75Y
06UniProtVAR_HBA_SHEEP_004 *L114HHBA_SHEEP  ---  ---A/CL113H
07UniProtVAR_HBA_SHEEP_005 *N116SHBA_SHEEP  ---  ---A/CN115S
08UniProtVAR_HBB_SHEEP_003 *N119SHBB_SHEEP  ---  ---B/DN120S
09UniProtVAR_HBB_SHEEP_004 *D128EHBB_SHEEP  ---  ---B/DD129E
10UniProtVAR_HBB_SHEEP_005 *K143RHBB_SHEEP  ---  ---B/DK144R
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (10, 20)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_HBA_SHEEP_001 *G16DHBA_SHEEP  ---  ---A/CG15D
02UniProtVAR_HBA_SHEEP_002 *G20SHBA_SHEEP  ---  ---A/CG19S
03UniProtVAR_HBB_SHEEP_001 *N49SHBB_SHEEP  ---  ---B/DN50S
04UniProtVAR_HBB_SHEEP_002 *P57AHBB_SHEEP  ---  ---B/DP58A
05UniProtVAR_HBA_SHEEP_003 *D76YHBA_SHEEP  ---  ---A/CD75Y
06UniProtVAR_HBA_SHEEP_004 *L114HHBA_SHEEP  ---  ---A/CL113H
07UniProtVAR_HBA_SHEEP_005 *N116SHBA_SHEEP  ---  ---A/CN115S
08UniProtVAR_HBB_SHEEP_003 *N119SHBB_SHEEP  ---  ---B/DN120S
09UniProtVAR_HBB_SHEEP_004 *D128EHBB_SHEEP  ---  ---B/DD129E
10UniProtVAR_HBB_SHEEP_005 *K143RHBB_SHEEP  ---  ---B/DK144R
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_HBA_SHEEP_001 *G16DHBA_SHEEP  ---  ---AG15D
02UniProtVAR_HBA_SHEEP_002 *G20SHBA_SHEEP  ---  ---AG19S
03UniProtVAR_HBB_SHEEP_001 *N49SHBB_SHEEP  ---  ---BN50S
04UniProtVAR_HBB_SHEEP_002 *P57AHBB_SHEEP  ---  ---BP58A
05UniProtVAR_HBA_SHEEP_003 *D76YHBA_SHEEP  ---  ---AD75Y
06UniProtVAR_HBA_SHEEP_004 *L114HHBA_SHEEP  ---  ---AL113H
07UniProtVAR_HBA_SHEEP_005 *N116SHBA_SHEEP  ---  ---AN115S
08UniProtVAR_HBB_SHEEP_003 *N119SHBB_SHEEP  ---  ---BN120S
09UniProtVAR_HBB_SHEEP_004 *D128EHBB_SHEEP  ---  ---BD129E
10UniProtVAR_HBB_SHEEP_005 *K143RHBB_SHEEP  ---  ---BK144R
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (10, 10)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_HBA_SHEEP_001 *G16DHBA_SHEEP  ---  ---CG15D
02UniProtVAR_HBA_SHEEP_002 *G20SHBA_SHEEP  ---  ---CG19S
03UniProtVAR_HBB_SHEEP_001 *N49SHBB_SHEEP  ---  ---DN50S
04UniProtVAR_HBB_SHEEP_002 *P57AHBB_SHEEP  ---  ---DP58A
05UniProtVAR_HBA_SHEEP_003 *D76YHBA_SHEEP  ---  ---CD75Y
06UniProtVAR_HBA_SHEEP_004 *L114HHBA_SHEEP  ---  ---CL113H
07UniProtVAR_HBA_SHEEP_005 *N116SHBA_SHEEP  ---  ---CN115S
08UniProtVAR_HBB_SHEEP_003 *N119SHBB_SHEEP  ---  ---DN120S
09UniProtVAR_HBB_SHEEP_004 *D128EHBB_SHEEP  ---  ---DD129E
10UniProtVAR_HBB_SHEEP_005 *K143RHBB_SHEEP  ---  ---DK144R
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLOBINPS01033 Globin family profile.HBB_SHEEP2-145
 
  2B:3-146
D:3-146
HBA_SHEEP3-142
 
  2A:2-141
C:2-141
Biological Unit 1 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLOBINPS01033 Globin family profile.HBB_SHEEP2-145
 
  2B:3-146
D:3-146
HBA_SHEEP3-142
 
  2A:2-141
C:2-141
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLOBINPS01033 Globin family profile.HBB_SHEEP2-145
 
  1B:3-146
-
HBA_SHEEP3-142
 
  1A:2-141
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLOBINPS01033 Globin family profile.HBB_SHEEP2-145
 
  1-
D:3-146
HBA_SHEEP3-142
 
  1-
C:2-141

(-) Exons   (0, 0)

(no "Exon" information available for 2QU0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:141
 aligned with HBA_SHEEP | P68240 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:141
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141 
            HBA_SHEEP     2 VLSAADKSNVKAAWGKVGGNAGAYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGEKVAAALTKAVGHLDDLPGTLSDLSDLHAHKLRVDPVNFKLLSHSLLVTLACHLPNDFTPAVHASLDKFLANVSTVLTSKYR 142
               SCOP domains d2qu0a_ A: automated matches                                                                                                                  SCOP domains
               CATH domains 2qu0A00 A:1-141 Globins                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------D---S-------------------------------------------------------Y-------------------------------------H-S-------------------------- SAPs(SNPs)
                PROSITE (2) -GLOBIN  PDB: A:2-141 UniProt: 3-142                                                                                                          PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qu0 A   1 VLSAADKSNVKAAWGKVGGNAGAYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGEKVAAALTKAVGHLDDLPGTLSDLSDLHAHKLRVDPVNFKLLSHSLLVTLACHLPNDFTPAVHASLDKFLANVSTVLTSKYR 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140 

Chain B from PDB  Type:PROTEIN  Length:145
 aligned with HBB_SHEEP | P02075 from UniProtKB/Swiss-Prot  Length:145

    Alignment length:145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     
            HBB_SHEEP     1 MLTAEEKAAVTGFWGKVKVDEVGAEALGRLLVVYPWTQRFFEHFGDLSNADAVMNNPKVKAHGKKVLDSFSNGMKHLDDLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHHGNEFTPVLQADFQKVVAGVANALAHKYH 145
               SCOP domains d2qu0b_ B: automated matches                                                                                                                      SCOP domains
               CATH domains 2qu0B00 B:2-146 Globins                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------S-------A-------------------------------------------------------------S--------E--------------R-- SAPs(SNPs)
                    PROSITE -GLOBIN  PDB: B:3-146 UniProt: 2-145                                                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qu0 B   2 MLTAEEKAAVTGFWGKVKVDEVGAEALGRLLVVYPWTQRFFEHFGDLSNADAVMNNPKVKAHGKKVLDSFSNGMKHLDDLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHHGNEFTPVLQADFQKVVAGVANALAHKYH 146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     

Chain C from PDB  Type:PROTEIN  Length:141
 aligned with HBA_SHEEP | P68240 from UniProtKB/Swiss-Prot  Length:142

    Alignment length:141
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141 
            HBA_SHEEP     2 VLSAADKSNVKAAWGKVGGNAGAYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGEKVAAALTKAVGHLDDLPGTLSDLSDLHAHKLRVDPVNFKLLSHSLLVTLACHLPNDFTPAVHASLDKFLANVSTVLTSKYR 142
               SCOP domains d2qu0c_ C: automated matches                                                                                                                  SCOP domains
               CATH domains 2qu0C00 C:1-141 Globins                                                                                                                       CATH domains
           Pfam domains (1) -----Globin-2qu0C01 C:6-106                                                                               ----------------------------------- Pfam domains (1)
           Pfam domains (2) -----Globin-2qu0C02 C:6-106                                                                               ----------------------------------- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------D---S-------------------------------------------------------Y-------------------------------------H-S-------------------------- SAPs(SNPs)
                PROSITE (2) -GLOBIN  PDB: C:2-141 UniProt: 3-142                                                                                                          PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qu0 C   1 VLSAADKSNVKAAWGKVGGNAGAYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGEKVAAALTKAVGHLDDLPGTLSDLSDLHAHKLRVDPVNFKLLSHSLLVTLACHLPNDFTPAVHASLDKFLANVSTVLTSKYR 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140 

Chain D from PDB  Type:PROTEIN  Length:145
 aligned with HBB_SHEEP | P02075 from UniProtKB/Swiss-Prot  Length:145

    Alignment length:145
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140     
            HBB_SHEEP     1 MLTAEEKAAVTGFWGKVKVDEVGAEALGRLLVVYPWTQRFFEHFGDLSNADAVMNNPKVKAHGKKVLDSFSNGMKHLDDLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHHGNEFTPVLQADFQKVVAGVANALAHKYH 145
               SCOP domains d2qu0d_ D: automated matches                                                                                                                      SCOP domains
               CATH domains 2qu0D00 D:2-146 Globins                                                                                                                           CATH domains
           Pfam domains (1) -----Globin-2qu0D01 D:7-111                                                                                   ----------------------------------- Pfam domains (1)
           Pfam domains (2) -----Globin-2qu0D02 D:7-111                                                                                   ----------------------------------- Pfam domains (2)
         Sec.struct. author ....hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------S-------A-------------------------------------------------------------S--------E--------------R-- SAPs(SNPs)
                    PROSITE -GLOBIN  PDB: D:3-146 UniProt: 2-145                                                                                                              PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qu0 D   2 MLTAEEKAAVTGFWGKVKVDEVGAEALGRLLVVYPWTQRFFEHFGDLSNADAVMNNPKVKAHGKKVLDSFSNGMKHLDDLKGTFAQLSELHCDKLHVDPENFRLLGNVLVVVLARHHGNEFTPVLQADFQKVVAGVANALAHKYH 146
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: Globin (291)

(-) Gene Ontology  (9, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (HBA_SHEEP | P68240)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
    GO:0005344    oxygen transporter activity    Enables the directed movement of oxygen into, out of or within a cell, or between cells.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0015671    oxygen transport    The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005833    hemoglobin complex    An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

Chain B,D   (HBB_SHEEP | P02075)
molecular function
    GO:0020037    heme binding    Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
    GO:0005506    iron ion binding    Interacting selectively and non-covalently with iron (Fe) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0019825    oxygen binding    Interacting selectively and non-covalently with oxygen (O2).
    GO:0005344    oxygen transporter activity    Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
    GO:0015671    oxygen transport    The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005833    hemoglobin complex    An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

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  HBA_SHEEP | P68240
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  HBB_SHEEP | P02075
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2QU0)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2QU0)