2QRD - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE ADENYLATE SENSOR FROM AMP-ACTIVATED PROTEIN KINASE IN COMPLEX WITH ADP AND ATP

Authors :   X. Jin, R. Townley, L. Shapiro

Date :   28 Jul 07 (Deposition) - 23 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.41

Chains :   Asym. Unit : A,B,C,D,E,G
Biol. Unit 1: A,B,G  (1x)
Biol. Unit 2: C,D,E  (1x)
Biol. Unit 3: A,B,C,D,E,G  (1x)

Keywords :   Ampk, Adp, Atp-Binding, Kinase, Nucleotide-Binding, Serine/Threonine- Protein Kinase, Transferase, Cbs Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   X. Jin, R. Townley, L. Shapiro
Structural Insight Into Ampk Regulation: Adp Comes Into Play.
Structure V. 15 1285 2007
PubMed-ID: 17937917 | Reference-DOI: 10.1016/J.STR.2007.07.017

Molecule 1 - SNF1-LIKE PROTEIN KINASE SSP2
	Chains	:	A, C
	EC Number	:	2.7.11.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PSMT3
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SSP2
	Organism Common	:	FISSION YEAST
	Organism Scientific	:	SCHIZOSACCHAROMYCES POMBE
	Organism Taxid	:	4896

Molecule 2 - SPCC1919.03C PROTEIN
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-DUET-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Common	:	FISSION YEAST
	Organism Scientific	:	SCHIZOSACCHAROMYCES POMBE
	Organism Taxid	:	4896

Molecule 3 - PROTEIN C1556.08C
	Chains	:	G, E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-DUET-1
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Common	:	FISSION YEAST
	Organism Scientific	:	SCHIZOSACCHAROMYCES POMBE
	Organism Taxid	:	4896

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	G
Biological Unit 1 (1x)	:	A	B				G
Biological Unit 2 (1x)	:			C	D	E
Biological Unit 3 (1x)	:	A	B	C	D	E	G

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	4	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Biological Unit 3 (2, 6)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	ATP	4	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP B:250 , GLN B:251 , SER B:252 , ARG G:33 , ILE G:35 , ILE G:55 , SER G:57 , PRO G:59 , ARG G:142 , THR G:162 , ARG G:165 , ARG G:287 , HIS G:289 , HOH G:1503 , HOH G:1538 , HOH G:1540 , HOH G:1547 , HOH G:1630	BINDING SITE FOR RESIDUE ADP G 1003
2	AC2	SOFTWARE	ARG G:141 , THR G:191 , LEU G:195 , ALA G:196 , ILE G:216 , SER G:217 , ALA G:218 , PRO G:220 , ARG G:290 , ILE G:303 , SER G:305 , ALA G:307 , ASP G:308 , HOH G:1617	BINDING SITE FOR RESIDUE ATP G 1001
3	AC3	SOFTWARE	ARG G:141 , GLN G:163 , THR G:191 , LEU G:195 , ALA G:196 , ASN G:215 , ILE G:216 , SER G:217 , PRO G:220 , HIS G:289 , ARG G:290 , ILE G:303 , SER G:305 , LEU G:306 , ALA G:307 , ASP G:308	BINDING SITE FOR RESIDUE ATP G 1501
4	AC4	SOFTWARE	ASP D:250 , GLN D:251 , SER D:252 , ARG E:33 , LEU E:34 , ILE E:35 , ILE E:55 , SER E:57 , PRO E:59 , ARG E:142 , THR E:162 , ARG E:165 , ARG E:287 , HIS E:289 , HOH E:1508 , HOH E:1548 , HOH E:1551 , HOH E:1594	BINDING SITE FOR RESIDUE ADP E 1004
5	AC5	SOFTWARE	ARG E:139 , ARG E:141 , THR E:191 , LEU E:195 , ALA E:196 , ILE E:216 , SER E:217 , ALA E:218 , PRO E:220 , ARG E:290 , ILE E:303 , SER E:305 , ALA E:307 , ASP E:308	BINDING SITE FOR RESIDUE ATP E 1002
6	AC6	SOFTWARE	ARG E:139 , ARG E:141 , GLN E:163 , THR E:191 , ALA E:196 , ASN E:215 , ILE E:216 , SER E:217 , PRO E:220 , HIS E:289 , ARG E:290 , ILE E:303 , SER E:305 , LEU E:306 , ALA E:307 , ASP E:308 , HOH E:1575	BINDING SITE FOR RESIDUE ATP E 1502

(no "SS Bond" information available for 2QRD)

Asymmetric Unit

No.	Residues
1	Phe A:560	-	Pro A:561
2	Phe C:560	-	Pro C:561
3	Glu D:223	-	Leu D:224

(no "SAP(SNP)/Variant" information available for 2QRD)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CBS	PS51371	CBS domain profile.	AAKG_SCHPO	29-89 115-177 187-247 262-319	8	E:29-89 G:29-89 E:115-177 G:115-177 E:187-247 G:187-247 E:262-318 G:262-318

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CBS	PS51371	CBS domain profile.	AAKG_SCHPO	29-89 115-177 187-247 262-319	4	- G:29-89 - G:115-177 - G:187-247 - G:262-318

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CBS	PS51371	CBS domain profile.	AAKG_SCHPO	29-89 115-177 187-247 262-319	4	E:29-89 - E:115-177 - E:187-247 - E:262-318 -

Biological Unit 3 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	CBS	PS51371	CBS domain profile.	AAKG_SCHPO	29-89 115-177 187-247 262-319	8	E:29-89 G:29-89 E:115-177 G:115-177 E:187-247 G:187-247 E:262-318 G:262-318

(no "Exon" information available for 2QRD)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:114
 aligned with SNF1_SCHPO | O74536 from UniProtKB/Swiss-Prot  Length:576

    Alignment length:127
                                   459       469       479       489       499       509       519       529       539       549       559       569       
           SNF1_SCHPO   450 NKWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYSHPERTADHGMDDLKSSFPFLDLCAMLVCKLFSA 576
               SCOP domains d2qrda_ A: Snf1-like protein kinase ssp2                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.eeee.hhhhhhhhhhhhhhhhh.ee....hhhhh.hhhh.eeeeeeehhhhhhh...eeeeeeeeeeeee..eeeeeeeeeeeee...-------------....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qrd A 450 NKWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYS-------------KSSFPFLDLCAMLVCKLFSA 576
                                   459       469       479       489       499       509       519       529       539   |     -       559       569       
                                                                                                                       543           557

Chain B from PDB  Type:PROTEIN  Length:91
 aligned with AAKB_SCHPO | P78789 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:93
                                   214       224       234       244       254       264       274       284       294   
           AAKB_SCHPO   205 SEQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTAMFKNFD 297
               SCOP domains d2qrdb_ B: auto  mated matches                                                                SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..--...........hhhhh.hhhhh..hhhhhh......hhhhh...eee......eeeeeeeee..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 2qrd B 205 SEQYSTEIPAFLTSN--QELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTAMFKNFD 297
                                   214    |  224       234       244       254       264       274       284       294   
                                        219  |                                                                           
                                           222

Chain C from PDB  Type:PROTEIN  Length:114
 aligned with SNF1_SCHPO | O74536 from UniProtKB/Swiss-Prot  Length:576

    Alignment length:127
                                   459       469       479       489       499       509       519       529       539       549       559       569       
           SNF1_SCHPO   450 NKWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIYSHPERTADHGMDDLKSSFPFLDLCAMLVCKLFSA 576
               SCOP domains d2qrdc_ C: Snf1-like protein kinase ssp2                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.eeee.hhhhhhhhhhhhhhhh..ee..........hhhh.eeeeeeehhhhhhh....eeeeeeeeeeee..eeeeeeeeeeee...-------------.....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qrd C 450 NKWHFGVRCRGDAPEILLAVYRALQRAGAQFTVPKPVNGKYRSDMYTIKSRWEIPHCKREGKNTYAYIELQLYEVMPGCFMLDVKSNGYKDIY-------------LKSSFPFLDLCAMLVCKLFSA 576
                                   459       469       479       489       499       509       519       529       539  |      -      |559       569       
                                                                                                                      542           556

Chain D from PDB  Type:PROTEIN  Length:92
 aligned with AAKB_SCHPO | P78789 from UniProtKB/Swiss-Prot  Length:298

    Alignment length:92
                                   215       225       235       245       255       265       275       285       295  
           AAKB_SCHPO   206 EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTAMFKNFD 297
               SCOP domains d2qrdd_ D: automated matches                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh..............hhhhh.hhhhh..hhhhhh......hhhhh...eee......eeeeeeeee..eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 2qrd D 206 EQYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLGVLALSATTRYHRKYVTTAMFKNFD 297
                                   215       225       235       245       255       265       275       285       295

Chain E from PDB  Type:PROTEIN  Length:324
 aligned with AAKG_SCHPO | Q10343 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:333
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331   
           AAKG_SCHPO     2 TDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNFESAV 334
               SCOP domains d2qrde1 E:2-181 automated matches                                                                                                                                                   d2qrde2 E:182-334 automated matches                                                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhh....eeeee....eeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhh..............hhhhhhhhhhhhh..eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhh..hhhhh...............hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhh..hhhhhhhhhhhhhh..........ee....hhhhhhhhhhhh...eeeee.....eeeeeehhhhhhhhhh...---------....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------CBS  PDB: E:29-89 UniProt: 29-89                             -------------------------CBS  PDB: E:115-177 UniProt: 115-177                           ---------CBS  PDB: E:187-247 UniProt: 187-247                         --------------CBS  PDB: E:262-318 UniProt: 262-319                      --------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qrd E   2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKT---------DNFESAV 334
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311      |  -      |331   
                                                                                                                                                                                                                                                                                                                                                      318       328

Chain G from PDB  Type:PROTEIN  Length:325
 aligned with AAKG_SCHPO | Q10343 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330    
           AAKG_SCHPO     1 MTDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKTTTPGVPEQTDNFESAV 334
               SCOP domains d2qrdg1 G:1-181 automated matches                                                                                                                                                    d2qrdg2 G:182-334 automated matches                                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhhh...eeeee....eeeeeehhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhh..............hhhhhhhhhhhh...eeeeeee......eeeeeeeehhhhhhhhhhhhhhhhhh..hhhhh...............hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhh..hhhhhhhhhhhhhh..........ee....hhhhhhhhhhhh...eeeee.....eeeeeehhhhhhhhhh...---------....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------CBS  PDB: G:29-89 UniProt: 29-89                             -------------------------CBS  PDB: G:115-177 UniProt: 115-177                           ---------CBS  PDB: G:187-247 UniProt: 187-247                         --------------CBS  PDB: G:262-318 UniProt: 262-319                      --------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qrd G   1 AMDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAMLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDKT---------DNFESAV 334
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       | -       330    
                                                                                                                                                                                                                                                                                                                                                       318       328

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 2QRD)

(no "Pfam Domain" information available for 2QRD)

Asymmetric Unit(hide GO term definitions)

Chain A,C (SNF1_SCHPO | O74536)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0031593	polyubiquitin modification-dependent protein binding	Interacting selectively and non-covalently with a protein upon poly-ubiquitination of the target protein.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004672	protein kinase activity	Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
	GO:0004674	protein serine/threonine kinase activity	Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:1904262	negative regulation of TORC1 signaling	Any process that stops, prevents or reduces the frequency, rate or extent of TORC1 signaling.
	GO:2000766	negative regulation of cytoplasmic translation	Any process that stops, prevents or reduces the frequency, rate or extent of cytoplasmic translation.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0006468	protein phosphorylation	The process of introducing a phosphate group on to a protein.
	GO:0046015	regulation of transcription by glucose	Any process involving glucose that modulates the frequency, rate or extent or transcription.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0044732	mitotic spindle pole body	The microtubule organizing center that forms as part of the mitotic cell cycle; functionally homologous to the animal cell centrosome.
	GO:0031588	nucleotide-activated protein kinase complex	A protein complex that possesses nucleotide-dependent protein kinase activity. The nucleotide can be AMP (in S. pombe and human) or ADP (in S. cerevisiae).
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

Chain B,D (AAKB_SCHPO | P78789)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0019887	protein kinase regulator activity	Modulates the activity of a protein kinase, an enzyme which phosphorylates a protein.
biological process
	GO:0042149	cellular response to glucose starvation	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose.
	GO:0045859	regulation of protein kinase activity	Any process that modulates the frequency, rate or extent of protein kinase activity.
	GO:0001932	regulation of protein phosphorylation	Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0031588	nucleotide-activated protein kinase complex	A protein complex that possesses nucleotide-dependent protein kinase activity. The nucleotide can be AMP (in S. pombe and human) or ADP (in S. cerevisiae).
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Chain E,G (AAKG_SCHPO | Q10343)

molecular function
	GO:0016208	AMP binding	Interacting selectively and non-covalently with AMP, adenosine monophosphate.
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0030295	protein kinase activator activity	Binds to and increases the activity of a protein kinase, an enzyme which phosphorylates a protein.
biological process
	GO:0032147	activation of protein kinase activity	Any process that initiates the activity of an inactive protein kinase.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0006357	regulation of transcription from RNA polymerase II promoter	Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0031588	nucleotide-activated protein kinase complex	A protein complex that possesses nucleotide-dependent protein kinase activity. The nucleotide can be AMP (in S. pombe and human) or ADP (in S. cerevisiae).
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	2qrd
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	SNF1_SCHPO \| O74536
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	2.7.11.1
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UniProtKB/Swiss-Prot
	AAKB_SCHPO \| P78789	:	2oox 2ooy 2qr1 2qrc 2qre
	AAKG_SCHPO \| Q10343	:	2oox 2ooy 2qr1 2qrc 2qre
	SNF1_SCHPO \| O74536	:	2oox 2ooy 2qr1 2qrc 2qre 3h4j

2qr1	AMP-ACTIVATED PROTEIN KINASE IN COMPLEX WITH ADP
2qrc	AMP-ACTIVATED PROTEIN KINASE IN COMPLEX WITH ADP AND AMP
2qre	AMP-ACTIVATED PROTEIN KINASE IN COMPLEX WITH AMZ

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

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PROSITE Motifs (1, 8)

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SCOP Domains (3, 8)

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Gene Ontology (32, 46)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File