2QQ0 - JenaLib

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:140 , CYS A:143 , CYS A:173 , CYS A:176	BINDING SITE FOR RESIDUE ZN A 400
2	AC2	SOFTWARE	CYS B:140 , CYS B:143 , CYS B:173 , CYS B:176	BINDING SITE FOR RESIDUE ZN B 402
3	AC3	SOFTWARE	THR A:17 , ANP A:601 , HOH A:616 , HOH A:617 , HOH A:749	BINDING SITE FOR RESIDUE MG A 450
4	AC4	SOFTWARE	THR B:17 , TMP B:601 , ADP B:701 , HOH B:725 , HOH B:797 , HOH B:844	BINDING SITE FOR RESIDUE MG B 452
5	AC5	SOFTWARE	GLU A:84 , GLN A:86 , PHE A:87 , LEU A:111 , THR A:114 , HIS A:115 , THR A:151 , GLU A:160 , ILE A:161 , ASP A:162 , VAL A:163 , GLY A:164 , TYR A:169 , ANP A:601 , HOH A:675 , HOH A:767	BINDING SITE FOR RESIDUE THM A 501
6	AC6	SOFTWARE	MET B:12 , LYS B:16 , HIS B:53 , GLU B:84 , GLN B:86 , PHE B:87 , LEU B:111 , THR B:114 , HIS B:115 , THR B:151 , GLU B:160 , ILE B:161 , ASP B:162 , VAL B:163 , GLY B:164 , TYR B:169 , MG B:452 , ADP B:701 , HOH B:717 , HOH B:725 , HOH B:774 , HOH B:797 , HOH B:798 , HOH B:844	BINDING SITE FOR RESIDUE TMP B 601
7	AC7	SOFTWARE	MET A:12 , TYR A:13 , SER A:14 , GLY A:15 , LYS A:16 , THR A:17 , THR A:18 , SER A:52 , HIS A:53 , GLU A:84 , ALA A:138 , VAL A:139 , GLN A:166 , MG A:450 , THM A:501 , HOH A:617 , HOH A:640 , HOH A:643 , HOH A:675 , HOH A:708 , HOH A:749 , GLU B:25 , LEU B:29	BINDING SITE FOR RESIDUE ANP A 601
8	AC8	SOFTWARE	GLU A:25 , LEU A:29 , TYR B:13 , SER B:14 , GLY B:15 , LYS B:16 , THR B:17 , THR B:18 , SER B:52 , HIS B:53 , ALA B:138 , VAL B:139 , MG B:452 , TMP B:601 , HOH B:725 , HOH B:811 , HOH B:828 , HOH B:843 , HOH B:844 , HOH B:882	BINDING SITE FOR RESIDUE ADP B 701

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:169
 aligned with KITH_THEMA | Q9WYN2 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           KITH_THEMA     2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLK 181
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhhhhhhhhhh..eeeeeee.-------......----...eee.hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhh..eeeeeee........hhhhhhhhhhh.eeee..............eeee...............eeeehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY---- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qq0 A   2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK-------TMIVSH----VEAHVIERPEEMRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLK 181
                                    11        21        31        |-      | 51 |    | 61        71        81        91       101       111       121       131       141       151       161       171       181
                                                                 40      48   53   58

Chain B from PDB  Type:PROTEIN  Length:170
 aligned with KITH_THEMA | Q9WYN2 from UniProtKB/Swiss-Prot  Length:184

    Alignment length:180
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181
           KITH_THEMA     2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLK 181
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -TK-2qq0B01 B:3-177                                                                                                                                                             ---- Pfam domains (1)
           Pfam domains (2) -TK-2qq0B02 B:3-177                                                                                                                                                             ---- Pfam domains (2)
         Sec.struct. author ...eeeee.....hhhhhhhhhhhhhhhh..eeeeeee.------.......----...eee.hhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhhhhh..eeeeee.........hhhhhhhhhhh.eeee..............eeee...............eeeehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------TK_CELLULAR_TY---- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qq0 B   2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK------STMIVSH----VEAHVIERPEEMRKYIEEDTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLK 181
                                    11        21        31        |-     |  51 |    | 61        71        81        91       101       111       121       131       141       151       161       171       181
                                                                 40     47    53   58

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (13, 13)

Asymmetric Unit(hide GO term definitions)

Chain A,B (KITH_THEMA | Q9WYN2)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004797	thymidine kinase activity	Catalysis of the reaction: ATP + thymidine = ADP + thymidine 5'-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0071897	DNA biosynthetic process	The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one.
	GO:0006259	DNA metabolic process	Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
	GO:0009157	deoxyribonucleoside monophosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0046104	thymidine metabolic process	The chemical reactions and pathways involving thymidine, deoxyribosylthymine thymine 2-deoxyriboside, a deoxynucleoside very widely distributed but occurring almost entirely as phosphoric esters in deoxynucleotides and deoxyribonucleic acid, DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	2qq0
		Family and Domain Information	:	ProDom \| SYSTERS
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	KITH_THEMA \| Q9WYN2
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	2.7.1.21
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 8)

Sites (8, 8)