Chain A from PDB Type:PROTEIN Length:117
aligned with TTHY_MOUSE | P07309 from UniProtKB/Swiss-Prot Length:147
Alignment length:117
37 47 57 67 77 87 97 107 117 127 137
TTHY_MOUSE 28 SKCPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 144
SCOP domains d2qpfa_ A: Transthyretin (synonym: prealbumin) SCOP domains
CATH domains 2qpfA00 A:8-124 [code=2.60.40.180, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh........eeeeeee......eeeeeeeee..eeeeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
2qpf A 8 SKcPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 124
| 17 27 37 47 57 67 77 87 97 107 117
|
10-OCS
Chain B from PDB Type:PROTEIN Length:115
aligned with TTHY_MOUSE | P07309 from UniProtKB/Swiss-Prot Length:147
Alignment length:115
38 48 58 68 78 88 98 108 118 128 138
TTHY_MOUSE 29 KCPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVS 143
SCOP domains d2qpfb_ B: Transthyretin (synonym: prealbumin) SCOP domains
CATH domains 2qpfB00 B:9-123 [code=2.60.40.180, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh........eeeeeee.......eeeeeeee..eeeeeeee. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
2qpf B 9 KcPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVS 123
| 18 28 38 48 58 68 78 88 98 108 118
10-OCS
Chain C from PDB Type:PROTEIN Length:117
aligned with TTHY_MOUSE | P07309 from UniProtKB/Swiss-Prot Length:147
Alignment length:117
37 47 57 67 77 87 97 107 117 127 137
TTHY_MOUSE 28 SKCPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 144
SCOP domains d2qpfc_ C: Transthyretin (synonym: prealbumin) SCOP domains
CATH domains 2qpfC00 C:8-124 [code=2.60.40.180, no name defined] CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh.....eeeeeeeeee......eeeeeeeee..eeeeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
2qpf C 8 SKcPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 124
| 17 27 37 47 57 67 77 87 97 107 117
10-OCS
Chain D from PDB Type:PROTEIN Length:114
aligned with TTHY_MOUSE | P07309 from UniProtKB/Swiss-Prot Length:147
Alignment length:114
39 49 59 69 79 89 99 109 119 129 139
TTHY_MOUSE 30 CPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVS 143
SCOP domains d2qpfd_ D: Transthyretin (synonym: prealbumin) SCOP domains
CATH domains -2qpfD00 D:11-123 [code=2.60.40.180, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh........eeeeeee.......eeeeeeee..eeeeeeee. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE -----TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
2qpf D 10 cPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVS 123
| 19 29 39 49 59 69 79 89 99 109 119
10-OCS
Chain E from PDB Type:PROTEIN Length:116
aligned with TTHY_MOUSE | P07309 from UniProtKB/Swiss-Prot Length:147
Alignment length:116
38 48 58 68 78 88 98 108 118 128 138
TTHY_MOUSE 29 KCPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 144
SCOP domains d2qpfe_ E: Transthyretin (synonym: prealbumin) SCOP domains
CATH domains 2qpfE00 E:9-124 [code=2.60.40.180, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh........eeeeeee......eeeeeeeee..eeeeeeeee. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
2qpf E 9 KcPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 124
| 18 28 38 48 58 68 78 88 98 108 118
10-OCS
Chain F from PDB Type:PROTEIN Length:116
aligned with TTHY_MOUSE | P07309 from UniProtKB/Swiss-Prot Length:147
Alignment length:116
38 48 58 68 78 88 98 108 118 128 138
TTHY_MOUSE 29 KCPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 144
SCOP domains d2qpff_ F: Transthyretin (synonym: prealbumin) SCOP domains
CATH domains 2qpfF00 F:9-124 [code=2.60.40.180, no name defined] CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh........eeeeeee......eeeeeeeee..eeeeeeeee. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
2qpf F 9 KcPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVSN 124
| 18 28 38 48 58 68 78 88 98 108 118
10-OCS
Chain G from PDB Type:PROTEIN Length:114
aligned with TTHY_MOUSE | P07309 from UniProtKB/Swiss-Prot Length:147
Alignment length:114
39 49 59 69 79 89 99 109 119 129 139
TTHY_MOUSE 30 CPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVS 143
SCOP domains d2qpfg_ G: Transthyretin (synonym: prealbumin) SCOP domains
CATH domains -2qpfG00 G:11-123 [code=2.60.40.180, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh........eeeeeee......eeeeeeeee..eeeeeeeee Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE -----TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
2qpf G 10 cPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVS 123
| 19 29 39 49 59 69 79 89 99 109 119
10-OCS
Chain H from PDB Type:PROTEIN Length:114
aligned with TTHY_MOUSE | P07309 from UniProtKB/Swiss-Prot Length:147
Alignment length:114
39 49 59 69 79 89 99 109 119 129 139
TTHY_MOUSE 30 CPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVS 143
SCOP domains d2qpfh_ H: Transthyretin (synonym: prealbumin) SCOP domains
CATH domains -2qpfH00 H:11-123 [code=2.60.40.180, no name defined] CATH domains
Pfam domains (1) Transthyretin-2qpfH01 H:10-121 -- Pfam domains (1)
Pfam domains (2) Transthyretin-2qpfH02 H:10-121 -- Pfam domains (2)
Pfam domains (3) Transthyretin-2qpfH03 H:10-121 -- Pfam domains (3)
Pfam domains (4) Transthyretin-2qpfH04 H:10-121 -- Pfam domains (4)
Pfam domains (5) Transthyretin-2qpfH05 H:10-121 -- Pfam domains (5)
Pfam domains (6) Transthyretin-2qpfH06 H:10-121 -- Pfam domains (6)
Pfam domains (7) Transthyretin-2qpfH07 H:10-121 -- Pfam domains (7)
Pfam domains (8) Transthyretin-2qpfH08 H:10-121 -- Pfam domains (8)
Sec.struct. author ..eeeeeee....ee....eeeeeee.....eeeeeeee.....ee...........eeeeeeehhhhhhhhh........eeeeeee......eeeeeeeee..eeeeeeeee Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE -----TRANSTHYRETIN_1 --------------------------------------------------------------------------TRANSTHYRETIN------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
2qpf H 10 cPLMVKVLDAVRGSPAVDVAVKVFKKTSEGSWEPFASGKTAESGELHGLTTDEKFVEGVYRVELDTKSYWKTLGISPFHEFADVVFTANDSGHRHYTIAALLSPYSYSTTAVVS 123
| 19 29 39 49 59 69 79 89 99 109 119
10-OCS
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |