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(-) Description

Title :  CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF SMU_1151C FROM STREPTOCOCCUS MUTANS
 
Authors :  U. A. Ramagopal, R. Toro, M. Gilmore, B. Wu, K. Bain, T. Gheyi, J. M. Saude S. K. Burley, S. C. Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)
Date :  11 Jul 07  (Deposition) - 24 Jul 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. A. Ramagopal, R. Toro, M. Gilmore, B. Wu, K. Bain, T. Gheyi, J. M. Sauder, S. K. Burley, S. C. Almo
Structure Of C-Terminal Domain Of Smu_1151C From Streptococcus Mutans.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: 700610
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BS-PSGX4(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SMU_1151C
    Organism Scientific: STREPTOCOCCUS MUTANS
    Organism Taxid: 210007
    Strain: UA159

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL-1Ligand/IonGLYCEROL
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU C:342 , LYS C:415 , VAL C:438 , HOH C:608 , HOH C:672BINDING SITE FOR RESIDUE EDO C 602
2AC2SOFTWAREPRO B:340 , GLU B:342 , LYS B:415 , VAL B:438 , HOH B:664BINDING SITE FOR RESIDUE EDO B 603
3AC3SOFTWAREPRO D:340 , GLU D:342 , LYS D:415 , VAL D:438 , GLN D:439 , ASP D:440 , HOH D:692BINDING SITE FOR RESIDUE GOL D 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QKP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QKP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QKP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QKP)

(-) Exons   (0, 0)

(no "Exon" information available for 2QKP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
 aligned with Q8DU08_STRMU | Q8DU08 from UniProtKB/TrEMBL  Length:455

    Alignment length:138
                                   322       332       342       352       362       372       382       392       402       412       422       432       442        
         Q8DU08_STRMU   313 AADRTTQQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSE 450
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qkpA00 A:313-450  [code=3.30.450.20, no name defined]                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eee..eeehhhhhhhhhhhh..eeeeee....eeee....hhhhh....hhhhh..hhhhh.hhhhhhhhhhhhhhhhh....eeeeeeee....eeeeeeeeeee.....eeeeeeeeee.hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qkp A 313 SLDRTTQQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSE 450
                                   322       332       342       352       362       372       382       392       402       412       422       432       442        


Chain B from PDB  Type:PROTEIN  Length:138
 aligned with Q8DU08_STRMU | Q8DU08 from UniProtKB/TrEMBL  Length:455

    Alignment length:138
                                   323       333       343       353       363       373       383       393       403       413       423       433       443        
         Q8DU08_STRMU   314 ADRTTQQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEF 451
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qkpB00 B:314-451  [code=3.30.450.20, no name defined]                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeehhhhhhhhhh....eeeeee....eeee....hhhhh....hhhhh..hhhhh.hhhhhhhhhhhhhhhhh....eeeeeeee....eeeeeeeeeee.....eeeeeeeeee.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qkp B 314 LDRTTQQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEF 451
                                   323       333       343       353       363       373       383       393       403       413       423       433       443        


Chain C from PDB  Type:PROTEIN  Length:138
 aligned with Q8DU08_STRMU | Q8DU08 from UniProtKB/TrEMBL  Length:455

    Alignment length:138
                                   323       333       343       353       363       373       383       393       403       413       423       433       443        
         Q8DU08_STRMU   314 ADRTTQQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEF 451
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qkpC00 C:314-451  [code=3.30.450.20, no name defined]                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeehhhhhhhhhhhh..eeeeee....eeee....hhhhh....hhhhh..hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....eeeeeeeeeee.....eeeeeeeeee.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qkp C 314 LDRTTQQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELDSEF 451
                                   323       333       343       353       363       373       383       393       403       413       423       433       443        


Chain D from PDB  Type:PROTEIN  Length:134
 aligned with Q8DU08_STRMU | Q8DU08 from UniProtKB/TrEMBL  Length:455

    Alignment length:134
                                   324       334       344       354       364       374       384       394       404       414       424       434       444    
         Q8DU08_STRMU   315 DRTTQQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELD 448
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2qkpD00 D:315-448  [code=3.30.450.20, no name defined]                                                                                 CATH domains
           Pfam domains (1) -----------------PAS_10-2qkpD01 D:332-442                                                                                       ------ Pfam domains (1)
           Pfam domains (2) -----------------PAS_10-2qkpD02 D:332-442                                                                                       ------ Pfam domains (2)
           Pfam domains (3) -----------------PAS_10-2qkpD03 D:332-442                                                                                       ------ Pfam domains (3)
           Pfam domains (4) -----------------PAS_10-2qkpD04 D:332-442                                                                                       ------ Pfam domains (4)
         Sec.struct. author .....eee..eeehhhhhhhhhhhh..eeeeee....eeee....hhhhh....hhhhh..hhhhh.hhhhhhhhhhhhhhhhh....eeeeeeee....eeeeeeeeeee.....eeeeeeeeeehhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qkp D 315 DRTTQQPFGNGYLSVEQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFKRTPSQVGRNVELCHPPKVLDKVKKVFELLRNGQRDKVNMWFQSERLGKFVYVTYAAVRDQAGDFQGVLEYVQDIKPFFELD 448
                                   324       334       344       354       364       374       384       394       404       414       424       434       444
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QKP)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: PAS_Fold (84)
(-)
Family: PAS_10 (1)
(-)
Streptococcus mutans (1)
1aPAS_10-2qkpD01D:332-442
1bPAS_10-2qkpD02D:332-442
1cPAS_10-2qkpD03D:332-442
1dPAS_10-2qkpD04D:332-442

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2QKP)

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