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(-) Description

Title :  CRYSTAL STRUCTURE OF 527-665 FRAGMENT OF USPA1 PROTEIN FROM MORAXELLA CATARRHALIS
 
Authors :  R. Conners, R. L. Brady
Date :  04 Jul 07  (Deposition) - 20 May 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Keywords :  Trimeric; Parallel Alpha-Helical Coiled-Coil, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Conners, D. J. Hill, E. Borodina, C. Agnew, S. J. Daniell, N. M. Burton, R. B. Sessions, A. R. Clarke, L. E. Catto, D. Lammie, T. Wess, R. L. Brady, M. Virji
The Moraxella Adhesin Uspa1 Binds To Its Human Ceacam1 Receptor By A Deformable Trimeric Coiled-Coil.
Embo J. V. 27 1779 2008
PubMed-ID: 18497748  |  Reference-DOI: 10.1038/EMBOJ.2008.101
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN USPA1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: M15
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 527-665
    Gene: USPA1
    Mutation: YES
    Organism Scientific: MORAXELLA CATARRHALIS
    Strain: ATCC25238

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): A 
Biological Unit 2 (3x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric Unit (2, 20)
No.NameCountTypeFull Name
1CL16Ligand/IonCHLORIDE ION
2PO44Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2PO46Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2PO46Ligand/IonPHOSPHATE ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHOH B:13 , HIS B:584BINDING SITE FOR RESIDUE PO4 B 1001
02AC2SOFTWAREHOH B:112 , GLN B:626 , HIS B:629BINDING SITE FOR RESIDUE PO4 B 1002
03AC3SOFTWAREHOH A:102 , HIS A:584BINDING SITE FOR RESIDUE PO4 A 1003
04AC4SOFTWAREHOH A:70 , GLN A:626 , HIS A:629BINDING SITE FOR RESIDUE PO4 A 1004
05AC5SOFTWAREASN A:566BINDING SITE FOR RESIDUE CL A 1005
06AC6SOFTWAREASN A:601BINDING SITE FOR RESIDUE CL A 1006
07AC7SOFTWAREASN A:615BINDING SITE FOR RESIDUE CL A 1007
08AC8SOFTWAREALA B:556 , ASN B:559BINDING SITE FOR RESIDUE CL B 1008
09AC9SOFTWAREASN A:643BINDING SITE FOR RESIDUE CL A 1009
10BC1SOFTWAREASN A:608BINDING SITE FOR RESIDUE CL A 1010
11BC2SOFTWAREALA A:556 , ASN A:559BINDING SITE FOR RESIDUE CL A 1011
12BC3SOFTWAREASN A:545BINDING SITE FOR RESIDUE CL A 1012
13BC4SOFTWAREASN A:594BINDING SITE FOR RESIDUE CL A 1013
14BC5SOFTWAREASN B:601BINDING SITE FOR RESIDUE CL B 1014
15BC6SOFTWAREASN B:615BINDING SITE FOR RESIDUE CL B 1015
16BC7SOFTWAREASN B:545BINDING SITE FOR RESIDUE CL B 1016
17BC8SOFTWAREASN B:594BINDING SITE FOR RESIDUE CL B 1017
18BC9SOFTWAREASN B:566BINDING SITE FOR RESIDUE CL B 1018
19CC1SOFTWARESER B:640 , ASN B:643BINDING SITE FOR RESIDUE CL B 1019
20CC2SOFTWAREASN B:608BINDING SITE FOR RESIDUE CL B 1020

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QIH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QIH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QIH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QIH)

(-) Exons   (0, 0)

(no "Exon" information available for 2QIH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
 aligned with Q9XD54_MORCA | Q9XD54 from UniProtKB/TrEMBL  Length:941

    Alignment length:136
                                   618       628       638       648       658       668       678       688       698       708       718       728       738      
         Q9XD54_MORCA   609 NTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQN 744
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qih A 531 NTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQK 666
                                   540       550       560       570       580       590       600       610       620       630       640       650       660      


Chain A from PDB  Type:PROTEIN  Length:136
 aligned with Q9XD56_MORCA | Q9XD56 from UniProtKB/TrEMBL  Length:863

    Alignment length:136
                                   540       550       560       570       580       590       600       610       620       630       640       650       660      
         Q9XD56_MORCA   531 NTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQN 666
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qih A 531 NTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQK 666
                                   540       550       560       570       580       590       600       610       620       630       640       650       660      


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q9XD54_MORCA | Q9XD54 from UniProtKB/TrEMBL  Length:941

    Alignment length:137
                                   618       628       638       648       658       668       678       688       698       708       718       728       738       
         Q9XD54_MORCA   609 NTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQNT 745
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qih B 531 NTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQKL 667
                                   540       550       560       570       580       590       600       610       620       630       640       650       660       


Chain B from PDB  Type:PROTEIN  Length:137
 aligned with Q9XD56_MORCA | Q9XD56 from UniProtKB/TrEMBL  Length:863

    Alignment length:137
                                   540       550       560       570       580       590       600       610       620       630       640       650       660       
         Q9XD56_MORCA   531 NTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQNT 667
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qih B 531 NTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADASFETLTKNQKL 667
                                   540       550       560       570       580       590       600       610       620       630       640       650       660
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QIH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2QIH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2QIH)

(-) Gene Ontology  (2, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9XD56_MORCA | Q9XD56)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

Chain A,B   (Q9XD54_MORCA | Q9XD54)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0019867    outer membrane    The external membrane of Gram-negative bacteria or certain organelles such as mitochondria and chloroplasts; freely permeable to most ions and metabolites.

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 Related Entries

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        Q9XD56_MORCA | Q9XD56: 3ntn 3pr7

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