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(-) Description

Title :  FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE FROM LEISHMANIA MEXICANA IN COMPLEX WITH MANNITOL-1,6-BISPHOSPHATE, A COMPETITIVE INHIBITOR
 
Authors :  J. Lafrance-Vanasse, J. Sygusch
Date :  20 Jun 07  (Deposition) - 21 Aug 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Beta Barrel, Aldolase, Leishmania, Fructose-1, 6-Bisphosphate, C- Teminal Tail, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Lafrance-Vanasse, J. Sygusch
Carboxy-Terminus Recruitment Induced By Substrate Binding I Eukaryotic Fructose Bis-Phosphate Aldolases
Biochemistry V. 46 9533 2007
PubMed-ID: 17661446  |  Reference-DOI: 10.1021/BI700615R

(-) Compounds

Molecule 1 - FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE
    Chains: A, B, C, D
    EC Number: 4.1.2.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 PLYSS
    Expression System Taxid: 562
    Expression System Vector: PET15B
    Expression System Vector Type: VECTOR
    Gene: ALD
    Organism Scientific: LEISHMANIA MEXICANA
    Organism Taxid: 5665

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1M2P4Ligand/IonD-MANNITOL-1,6-DIPHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:43 , SER A:45 , SER A:48 , LYS A:156 , ARG A:158 , GLU A:197 , LYS A:239 , SER A:281 , GLY A:282 , TYR A:311 , ALA A:312 , ARG A:313 , HOH A:677 , HOH A:775 , HOH A:798BINDING SITE FOR RESIDUE M2P A 400
2AC2SOFTWAREASP B:43 , SER B:45 , SER B:48 , LYS B:116 , LYS B:156 , ARG B:158 , GLU B:197 , LYS B:239 , SER B:281 , GLY B:282 , ALA B:312 , ARG B:313 , HOH B:665 , HOH B:776 , HOH B:830BINDING SITE FOR RESIDUE M2P B 400
3AC3SOFTWAREASP C:43 , SER C:45 , SER C:48 , LYS C:116 , LYS C:156 , ARG C:158 , GLU C:197 , LYS C:239 , SER C:281 , GLY C:282 , TYR C:311 , ALA C:312 , ARG C:313 , HOH C:605 , HOH C:618 , HOH C:621BINDING SITE FOR RESIDUE M2P C 400
4AC4SOFTWAREALA D:41 , ASP D:43 , GLU D:44 , SER D:45 , SER D:48 , LYS D:116 , LYS D:156 , ARG D:158 , GLU D:197 , LYS D:239 , LEU D:280 , SER D:281 , GLY D:282 , TYR D:311 , ALA D:312 , ARG D:313 , HOH D:417 , HOH D:583 , HOH D:768BINDING SITE FOR RESIDUE M2P D 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QDH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QDH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QDH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QDH)

(-) Exons   (0, 0)

(no "Exon" information available for 2QDH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:366
 aligned with Q9U5N6_LEIME | Q9U5N6 from UniProtKB/TrEMBL  Length:371

    Alignment length:366
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360      
         Q9U5N6_LEIME     1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDASSSSLYV 366
               SCOP domains d2qdha_ A: automated matches                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2qdhA00 A:1-366 Aldolase class I                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.hhhhhhh.....hhhhhhhhhhhhh....eeeee..hhhhhhhhh.......hhhhhhhhhhhhhh..hhhh.eeeeeehhhhhhh......hhhhhhhhh..eeeee....eee........eee....hhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhhh.ee...............hhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhh........eeeeeehhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qdh A   1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDASSSSLYV 366
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360      


Chain B from PDB  Type:PROTEIN  Length:366
 aligned with Q9U5N6_LEIME | Q9U5N6 from UniProtKB/TrEMBL  Length:371

    Alignment length:366
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360      
         Q9U5N6_LEIME     1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDASSSSLYV 366
               SCOP domains d2qdhb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains 2qdhB00 B:1-366 Aldolase class I                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.hhhhhhh.....hhhhhhhhhhhhh....eeeee..hhhhhhhhh.......hhhhhhhhhhhhhh..hhhh.eeeeeehhhhhhh......hhhhhhhhh..eeeee....eee........eee....hhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhee...............hhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhh........eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qdh B   1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDDASSSSLYV 366
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360      


Chain C from PDB  Type:PROTEIN  Length:358
 aligned with Q9U5N6_LEIME | Q9U5N6 from UniProtKB/TrEMBL  Length:371

    Alignment length:358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        
         Q9U5N6_LEIME     1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDD 358
               SCOP domains d2qdhc_ C: automated matches                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2qdhC00 C:1-358 Aldolase class I                                                                                                                                                                                                                                                                                                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhh.....hhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhh.eeeeeehhhhhh.......hhhhhhhhh..eeeee....eee........eee....hhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhee...............hhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhh........eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qdh C   1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDD 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain D from PDB  Type:PROTEIN  Length:358
 aligned with Q9U5N6_LEIME | Q9U5N6 from UniProtKB/TrEMBL  Length:371

    Alignment length:358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        
         Q9U5N6_LEIME     1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDD 358
               SCOP domains d2qdhd_ D: automated matches                                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 2qdhD00 D:1-358 Aldolase class I                                                                                                                                                                                                                                                                                                                                       CATH domains
           Pfam domains (1) -----------------------Glycolytic-2qdhD01 D:24-358                                                                                                                                                                                                                                                                                                                     Pfam domains (1)
           Pfam domains (2) -----------------------Glycolytic-2qdhD02 D:24-358                                                                                                                                                                                                                                                                                                                     Pfam domains (2)
           Pfam domains (3) -----------------------Glycolytic-2qdhD03 D:24-358                                                                                                                                                                                                                                                                                                                     Pfam domains (3)
           Pfam domains (4) -----------------------Glycolytic-2qdhD04 D:24-358                                                                                                                                                                                                                                                                                                                     Pfam domains (4)
         Sec.struct. author ..eeeee.hhhhhhh.....hhhhhhhhhhhhh....eeee...hhhhhhhhh.......hhhhhhhhhhhhhh..hhhh.eeeeeehhhhhh.......hhhhhhhhh..eeeee....eee........eee....hhhhhhhhhhhh...eeeeeeee.......hhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhee...............hhhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhhhh........eeeeeehhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qdh D   1 MSRVTVLQSQLPAYNRLKTPYESELIATVKKLTTPGKGLLAADESIGSCTKRFQPIGLSNTEEHRRQYRALMLEAEGFEQYISGVILHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQMTEGLDGYVKRASAYYKKGCRFCKWRNVYKIQNGTVSESAVRFNAETLARYAILSQMSGLVPIVEPEVMIDGKHDIDTCQRVSEHVWREVVAALQRHGVIWEGCLLKPNMVVPGAESGKTAAPEQVAHYTVMTLARTMPAMLPGVMFLSGGLSEVQASEYLNAINNSPLPRPYFLSFSYARALQSSALKAWGGKESGLAAGRRAFLHRARMNSMAQLGKYKRSDDD 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Glycolytic] (21)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (Q9U5N6_LEIME | Q9U5N6)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0004332    fructose-bisphosphate aldolase activity    Catalysis of the reaction: D-fructose 1,6-bisphosphate = glycerone phosphate + D-glyceraldehyde-3-phosphate.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9U5N6_LEIME | Q9U5N6: 1epx 2qap 2qdg

(-) Related Entries Specified in the PDB File

1epx APO ENZYME
2qap APO ENZYME
2qdg