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(-) Description

Title :  CRYSTAL STRUCTURE OF MANDELATE RACEMASE/MUCONATE LACTONIZING FAMILY PROTEIN FROM AZOARCUS SP. EBN1
 
Authors :  R. Agarwal, S. K. Burley, S. Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  20 Jun 07  (Deposition) - 03 Jul 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.93
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Psi-Ii, Nysgxrc, 9379A, Enolase, Structural Genomics, Protein Structure Initiative, Psi-2, New York Sgx Research Center For Structural Genomics, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agarwal, S. K. Burley, S. Swaminathan
Crystal Structure Of Mandelate Racemase/Muconate Lactonizin Enzyme Family Protein From Azoarcus Sp. Ebn1.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FAMILY PROTEIN
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)RIL CODON +
    Expression System Taxid: 562
    Expression System Vector: PET
    Expression System Vector Type: PLASMID
    Gene: AZOSEA32060, AZOSEA32140, EBA5637, EBA5652
    Organism Scientific: AZOARCUS SP.
    Organism Taxid: 76114
    Strain: EBN1

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1BA8Ligand/IonBARIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:195 , ASN A:197 , GLU A:221 , ASP A:246 , GLU A:247BINDING SITE FOR RESIDUE BA A 401
2AC2SOFTWAREASP B:195 , ASN B:197 , GLU B:221 , ASP B:246 , GLU B:247 , HOH B:481BINDING SITE FOR RESIDUE BA B 401
3AC3SOFTWAREASP C:195 , ASN C:197 , GLU C:221 , ASP C:246 , GLU C:247BINDING SITE FOR RESIDUE BA C 401
4AC4SOFTWAREASP D:195 , ASN D:197 , GLU D:221 , ASP D:246 , GLU D:247 , HOH D:512BINDING SITE FOR RESIDUE BA D 401
5AC5SOFTWAREASP E:195 , ASN E:197 , GLU E:221 , ASP E:246 , GLU E:247BINDING SITE FOR RESIDUE BA E 401
6AC6SOFTWAREASP F:195 , ASN F:197 , GLU F:221 , ASP F:246 , GLU F:247BINDING SITE FOR RESIDUE BA F 401
7AC7SOFTWAREASP G:195 , ASN G:197 , GLU G:221 , ASP G:246 , GLU G:247BINDING SITE FOR RESIDUE BA G 401
8AC8SOFTWAREASP H:195 , ASN H:197 , GLU H:221 , ASP H:246 , GLU H:247BINDING SITE FOR RESIDUE BA H 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QDE)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Gly A:170 -Pro A:171
2Gly B:170 -Pro B:171
3Gly C:170 -Pro C:171
4Gly D:170 -Pro D:171
5Gly E:170 -Pro E:171
6Gly F:170 -Pro F:171
7Gly G:170 -Pro G:171
8Gly H:170 -Pro H:171

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QDE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QDE)

(-) Exons   (0, 0)

(no "Exon" information available for 2QDE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:375
 aligned with Q5P025_AROAE | Q5P025 from UniProtKB/TrEMBL  Length:387

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
         Q5P025_AROAE     1 MKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 386
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------2qdeA02 A:123-361 Enolase superfamily                                                                                                                                                                                                          --------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...-----------.eeeeeeeeee....eeeee...........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee..ee....hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.hhhhh....hhhhhhh...hhhhh.........eee..eee...........hhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qde A   3 LKITKVEVIPISTPMK-----------RIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 388
                                    12     |   -       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
                                          18          30                                                                                                                                                                                                                                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:375
 aligned with Q5P025_AROAE | Q5P025 from UniProtKB/TrEMBL  Length:387

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
         Q5P025_AROAE     1 MKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 386
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------2qdeB02 B:123-361 Enolase superfamily                                                                                                                                                                                                          --------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...-----------.eeeeeeeeee....eeeee...........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee..ee....hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.hhhhh....hhhhhhh...hhhhh.........eee..eee...........hhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qde B   3 LKITKVEVIPISTPMK-----------RIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 388
                                    12     |   -       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
                                          18          30                                                                                                                                                                                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:375
 aligned with Q5P025_AROAE | Q5P025 from UniProtKB/TrEMBL  Length:387

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
         Q5P025_AROAE     1 MKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 386
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------2qdeC02 C:123-361 Enolase superfamily                                                                                                                                                                                                          --------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...-----------.eeeeeeeeee....eeeee...........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhh........ee..ee....hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh.hhhhh....hhhhhhh.................eee..eee...........hhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qde C   3 LKITKVEVIPISTPMK-----------RIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 388
                                    12     |   -       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
                                          18          30                                                                                                                                                                                                                                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:375
 aligned with Q5P025_AROAE | Q5P025 from UniProtKB/TrEMBL  Length:387

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
         Q5P025_AROAE     1 MKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 386
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------2qdeD02 D:123-361 Enolase superfamily                                                                                                                                                                                                          --------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...-----------.eeeeeeeeee....eeeee...........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee..ee....hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.hhhhh....hhhhhhh...hhhhh.........eee..eee...........hhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qde D   3 LKITKVEVIPISTPMK-----------RIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 388
                                    12     |   -       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
                                          18          30                                                                                                                                                                                                                                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:375
 aligned with Q5P025_AROAE | Q5P025 from UniProtKB/TrEMBL  Length:387

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
         Q5P025_AROAE     1 MKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 386
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------2qdeE02 E:123-361 Enolase superfamily                                                                                                                                                                                                          --------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...-----------.eeeeeeeeee....eeeee...........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee..ee....hhhhhhhhhhhhhhh....eeee...hhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.hhhhh....hhhhhhh...hhhhh.........eee..eee...........hhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qde E   3 LKITKVEVIPISTPMK-----------RIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 388
                                    12     |   -       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
                                          18          30                                                                                                                                                                                                                                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:375
 aligned with Q5P025_AROAE | Q5P025 from UniProtKB/TrEMBL  Length:387

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
         Q5P025_AROAE     1 MKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 386
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------2qdeF02 F:123-361 Enolase superfamily                                                                                                                                                                                                          --------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...-----------.eeeeeeeeee....eeeee...........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee..ee....hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhh......eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.hhhhh....hhhhhhh...hhhhh.........eee..eee...........hhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qde F   3 LKITKVEVIPISTPMK-----------RIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 388
                                    12     |   -       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
                                          18          30                                                                                                                                                                                                                                                                                                                                                                      


Chain G from PDB  Type:PROTEIN  Length:375
 aligned with Q5P025_AROAE | Q5P025 from UniProtKB/TrEMBL  Length:387

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
         Q5P025_AROAE     1 MKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 386
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------2qdeG02 G:123-361 Enolase superfamily                                                                                                                                                                                                          --------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...-----------.eeeeeeeeee....eeeee...........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee..ee....hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.hhhhh....hhhhhhh.................eee..eee...........hhhhhhhh.......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qde G   3 LKITKVEVIPISTPMK-----------RIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 388
                                    12     |   -       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
                                          18          30                                                                                                                                                                                                                                                                                                                                                                      


Chain H from PDB  Type:PROTEIN  Length:375
 aligned with Q5P025_AROAE | Q5P025 from UniProtKB/TrEMBL  Length:387

    Alignment length:386
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380      
         Q5P025_AROAE     1 MKITKVEVIPISTPMKRAQLMRGATLARIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 386
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------2qdeH02 H:123-361 Enolase superfamily                                                                                                                                                                                                          --------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee...-----------.eeeeeeeeee....eeeee...........hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.......ee..ee....hhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhhhhhhhhh...ee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh..eee.....hhhhhhhhhhhhhhh.hhhhh....hhhhhhh...hhhhh.........eee..eee...........hhhhhhhhh......eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qde H   3 LKITKVEVIPISTPMK-----------RIDGVLLKLHSDEGLVGIADAGDTSSWYRGETQDSITSMICDFFAPKVLLGEDPTKIEKIVGRMDILTRDNNQAKATVDFALHDLVGKRFGVPVYQLLGGKTIERIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGGPLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLRGKVATPIYADESAQELHDLLAIINKGAADGLMIKTQKAGGLLKAQRWLTLARLANLPVICGCMVGSGLEASPAAHLLAANDWIAQFPQENAGPLHIHDCLNSRDIDNDIALNVPRFEGGYLYPNDGPGLGIELNEDLVRRLVTPGKAARVVT 388
                                    12     |   -       |32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382      
                                          18          30
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QDE)

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Alpha-Beta Barrel (2994)
(-)
Topology: TIM Barrel (2806)
(-)
Homologous Superfamily: Enolase superfamily (142)
(-)
Ebn1 (Azoarcus sp) (1)
1a2qdeA02A:123-361
1b2qdeB02B:123-361
1c2qdeC02C:123-361
1d2qdeD02D:123-361
1e2qdeE02E:123-361
1f2qdeF02F:123-361
1g2qdeG02G:123-361
1h2qdeH02H:123-361

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2QDE)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (Q5P025_AROAE | Q5P025)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
biological process
    GO:0009063    cellular amino acid catabolic process    The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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