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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (YP_323524.1) FROM ANABAENA VARIABILIS ATCC 29413 AT 2.11 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  25 May 07  (Deposition) - 05 Jun 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Yp_323524. 1, Uncharacterized Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Uncharacterized Protein (Yp_323524. 1) From Anabaena Variabilis Atcc 29413 At 2. 11 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_323524.1, AVA_3019
    Organism Scientific: ANABAENA VARIABILIS ATCC 29413
    Organism Taxid: 240292
    Strain: PCC 7937

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 17)

Asymmetric Unit (5, 17)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CL3Ligand/IonCHLORIDE ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
4MSE6Mod. Amino AcidSELENOMETHIONINE
5PG42Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EDO-1Ligand/Ion1,2-ETHANEDIOL
4MSE2Mod. Amino AcidSELENOMETHIONINE
5PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EDO-1Ligand/Ion1,2-ETHANEDIOL
4MSE2Mod. Amino AcidSELENOMETHIONINE
5PG41Ligand/IonTETRAETHYLENE GLYCOL
Biological Unit 3 (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CL-1Ligand/IonCHLORIDE ION
3EDO2Ligand/Ion1,2-ETHANEDIOL
4MSE2Mod. Amino AcidSELENOMETHIONINE
5PG4-1Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL B:86 , GLU B:87 , SER B:105 , TYR B:106 , GLY B:108 , HIS B:109 , HIS B:110BINDING SITE FOR RESIDUE ACT B 139
02AC2SOFTWAREGLU C:87 , SER C:105 , TYR C:106 , GLY C:108 , HIS C:109 , HIS C:110BINDING SITE FOR RESIDUE ACT C 139
03AC3SOFTWAREVAL A:86 , GLU A:87 , SER A:105 , TYR A:106 , GLY A:108 , HIS A:109 , HIS A:110 , HOH A:213BINDING SITE FOR RESIDUE ACT A 139
04AC4SOFTWARETHR A:60 , ALA A:61 , ASP A:62 , TYR A:91 , TYR A:102 , HOH A:144BINDING SITE FOR RESIDUE ACT A 140
05AC5SOFTWARECYS A:23 , MSE A:128 , GLY A:130BINDING SITE FOR RESIDUE CL A 141
06AC6SOFTWARECYS B:23 , GLY B:130BINDING SITE FOR RESIDUE CL B 140
07AC7SOFTWAREHOH B:160BINDING SITE FOR RESIDUE CL B 141
08AC8SOFTWARETYR A:120 , TYR A:121 , ILE B:17 , LYS B:20 , GLU B:34 , HOH B:193 , SER C:33 , GLU C:36BINDING SITE FOR RESIDUE PG4 B 142
09AC9SOFTWARELYS A:20 , TYR C:120 , TYR C:121BINDING SITE FOR RESIDUE PG4 A 142
10BC1SOFTWAREGLU C:87 , GLY C:88 , HIS C:110BINDING SITE FOR RESIDUE EDO C 140
11BC2SOFTWARETHR C:60 , ALA C:61 , ASP C:62 , VAL C:86 , TYR C:91 , TYR C:102 , HOH C:142 , HOH C:178BINDING SITE FOR RESIDUE EDO C 141

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Q22)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Gly A:130 -His A:131
2Gly B:130 -His B:131
3Gly C:130 -His C:131

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Q22)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Q22)

(-) Exons   (0, 0)

(no "Exon" information available for 2Q22)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
 aligned with Q3M8Q7_ANAVT | Q3M8Q7 from UniProtKB/TrEMBL  Length:138

    Alignment length:131
                                    17        27        37        47        57        67        77        87        97       107       117       127       137 
         Q3M8Q7_ANAVT     8 NLTTADAKKILNKFNCLDIAPILKPSEKESVRRALILITKLSDYQILGICADTADEGLLAMKTYSHALGYEVPIDLPVVEGPVYIKLNGKNGLCYLDSYAGHHRGVLVSCQSYYEGGINEMYGHLPLDLFV 138
               SCOP domains d2q22a1 A:8-138 Uncharacterized protein Ava3019                                                                                     SCOP domains
               CATH domains 2q22A00 A:8-138 Dihydrodipicolinate Reductase; domain 2                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhh.....-........eeeeee.....eeeee......eeeeeee........eeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q22 A   8 NLTTADAKKILNKFNCLDIAPILKPSEKESVRRALILITKLSDYQILGICADTADEGLLAmKTYSHALGYEVP-DLPVVEGPVYIKLNGKNGLCYLDSYAGHHRGVLVSCQSYYEGGINEmYGHLPLDLFV 138
                                    17        27        37        47        57        67|       77  | |   87        97       107       117       127|      137 
                                                                                       68-MSE      80 |                                           128-MSE      
                                                                                                     82                                                        


Chain B from PDB  Type:PROTEIN  Length:130
 aligned with Q3M8Q7_ANAVT | Q3M8Q7 from UniProtKB/TrEMBL  Length:138

    Alignment length:131
                                    17        27        37        47        57        67        77        87        97       107       117       127       137 
         Q3M8Q7_ANAVT     8 NLTTADAKKILNKFNCLDIAPILKPSEKESVRRALILITKLSDYQILGICADTADEGLLAMKTYSHALGYEVPIDLPVVEGPVYIKLNGKNGLCYLDSYAGHHRGVLVSCQSYYEGGINEMYGHLPLDLFV 138
               SCOP domains d2q22b_ B: Uncharacterized protein Ava3019                                                                                          SCOP domains
               CATH domains 2q22B00 B:8-138 Dihydrodipicolinate Reductase; domain 2                                                                             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhh.....-........eeeeee.....eeeee......eeeeeee........eeeeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q22 B   8 NLTTADAKKILNKFNCLDIAPILKPSEKESVRRALILITKLSDYQILGICADTADEGLLAmKTYSHALGYEVP-DLPVVEGPVYIKLNGKNGLCYLDSYAGHHRGVLVSCQSYYEGGINEmYGHLPLDLFV 138
                                    17        27        37        47        57        67|       77  | |   87        97       107       117       127|      137 
                                                                                       68-MSE      80 |                                           128-MSE      
                                                                                                     82                                                        


Chain C from PDB  Type:PROTEIN  Length:129
 aligned with Q3M8Q7_ANAVT | Q3M8Q7 from UniProtKB/TrEMBL  Length:138

    Alignment length:130
                                    18        28        38        48        58        68        78        88        98       108       118       128       138
         Q3M8Q7_ANAVT     9 LTTADAKKILNKFNCLDIAPILKPSEKESVRRALILITKLSDYQILGICADTADEGLLAMKTYSHALGYEVPIDLPVVEGPVYIKLNGKNGLCYLDSYAGHHRGVLVSCQSYYEGGINEMYGHLPLDLFV 138
               SCOP domains d2q22c_ C: Uncharacterized protein Ava3019                                                                                         SCOP domains
               CATH domains 2q22C00 C:9-138 Dihydrodipicolinate Reductase; domain 2                                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhh.....-........eeeeee.....eeeee......eeeeeee........eeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q22 C   9 LTTADAKKILNKFNCLDIAPILKPSEKESVRRALILITKLSDYQILGICADTADEGLLAmKTYSHALGYEVP-DLPVVEGPVYIKLNGKNGLCYLDSYAGHHRGVLVSCQSYYEGGINEmYGHLPLDLFV 138
                                    18        28        38        48        58        68        78 | |    88        98       108       118       128       138
                                                                                      68-MSE      80 |                                           128-MSE      
                                                                                                    82
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2Q22)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2Q22)

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