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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN (YP_563039.1) FROM SHEWANELLA DENITRIFICANS OS217 AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  18 May 07  (Deposition) - 29 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Yp_563039. 1, Uncharacterized Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Uncharacterized Protein (Yp_563039. 1) From Shewanella Denitrificans Os217 At 1. 80 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: BAA-1090
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YP_563039.1, SDEN_2034
    Organism Scientific: SHEWANELLA DENITRIFICANS OS217
    Organism Taxid: 318161
    Strain: OS217, DSM 15013

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU B:99 , LYS B:117 , GLY B:118 , HIS B:119 , GLN B:131 , THR B:133BINDING SITE FOR RESIDUE GOL B 138
2AC2SOFTWAREGLU A:99 , LYS A:117 , GLY A:118 , HIS A:119 , GLN A:131 , THR A:133 , HOH A:178BINDING SITE FOR RESIDUE GOL A 138

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2Q03)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2Q03)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2Q03)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2Q03)

(-) Exons   (0, 0)

(no "Exon" information available for 2Q03)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:133
 aligned with Q12ML0_SHEDO | Q12ML0 from UniProtKB/TrEMBL  Length:137

    Alignment length:133
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   
         Q12ML0_SHEDO     5 TKLQTIIGMFQITAWDETSYFESDNGAKLTQAVITQSYQGVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVSTENGQANYQITLQDS 137
               SCOP domains d2q03a1 A:5-137 Uncharacterized protein Sden_2034                                                                                     SCOP domains
               CATH domains 2q03A00 A:5-137 SO1590-like                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeeee.....eeeeeeeeeee...eeeeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeee.....ee....eeeeeeeee....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q03 A   5 TKLQTIIGmFQITAWDETSYFESDNGAKLTQAVITQSYQGVLQGHSEIRYLmSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVSTENGQANYQITLQDS 137
                                    14        24        34        44        54 |      64        74        84        94       104       114       124       134   
                                   13-MSE                                     56-MSE                                                                             


Chain B from PDB  Type:PROTEIN  Length:131
 aligned with Q12ML0_SHEDO | Q12ML0 from UniProtKB/TrEMBL  Length:137

    Alignment length:131
                                    14        24        34        44        54        64        74        84        94       104       114       124       134 
         Q12ML0_SHEDO     5 TKLQTIIGMFQITAWDETSYFESDNGAKLTQAVITQSYQGVLQGHSEIRYLMSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVSTENGQANYQITLQ 135
               SCOP domains d2q03b_ B: Uncharacterized protein Sden_2034                                                                                        SCOP domains
               CATH domains 2q03B00 B:5-135 SO1590-like                                                                                                         CATH domains
           Pfam domains (1) DUF3224-2q03B01 B:5-135                                                                                                             Pfam domains (1)
           Pfam domains (2) DUF3224-2q03B02 B:5-135                                                                                                             Pfam domains (2)
         Sec.struct. author ...eeeeeeeeeeeeeeeeeee.....eeeeeeeeeee...eeeeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeeeeeeeee..eeeeeeee.....ee.....eeeeeeee....eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2q03 B   5 TKLQTIIGmFQITAWDETSYFESDNGAKLTQAVITQSYQGVLQGHSEIRYLmSYQDNANATFVGFEHFTGSLGDKKGSFILQHKGLFAAGVASSEFELVERSATGDFVHLVGKGHFVSTENGQANYQITLQ 135
                                    14        24        34        44        54 |      64        74        84        94       104       114       124       134 
                                   13-MSE                                     56-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF3224] (2)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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