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(-) Description

Title :  CRYSTAL STRUCTURE OF AMINOGLYCOSIDE N-ACETYLTRANSFERASE AAC(6')-IB11
 
Authors :  F. Maurice, I. Broutin, I. Podglajen, P. Benas, E. Collatz, F. Dardel
Date :  04 May 07  (Deposition) - 08 Apr 08  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gnat, Aminoglycoside Acetyltransferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Maurice, I. Broutin, I. Podglajen, P. Benas, E. Collatz, F. Dardel
Enzyme Structural Plasticity And The Emergence Of Broad-Spectrum Antibiotic Resistance.
Embo Rep. V. 9 344 2008
PubMed-ID: 18292754  |  Reference-DOI: 10.1038/EMBOR.2008.9
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AMINOGLYCOSIDE 6-N-ACETYLTRANSFERASE TYPE IB11
    Chains: A, B
    EC Number: 2.3.1.82
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET101
    Expression System Taxid: 562
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 602

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:83 , TRP A:92 , TRP A:93 , ASP A:105 , LEU A:106 , SER A:107 , ASP A:142 , TYR A:154 , HOH A:555 , HOH A:592 , HOH A:598 , TRP B:38 , TRP B:39BINDING SITE FOR RESIDUE EPE A 500
2AC2SOFTWARETRP A:38 , TRP A:39 , TYR B:83 , TRP B:92 , ASP B:105 , LEU B:106 , SER B:107 , ASP B:142 , TYR B:154 , HOH B:538 , HOH B:542 , HOH B:549 , HOH B:590BINDING SITE FOR RESIDUE EPE B 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PR8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PR8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PR8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PR8)

(-) Exons   (0, 0)

(no "Exon" information available for 2PR8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
 aligned with Q8GLI5_SALTM | Q8GLI5 from UniProtKB/TrEMBL  Length:189

    Alignment length:173
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   
         Q8GLI5_SALTM    11 DSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDLSLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPDGPAVYMVQTRQAFE 183
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhh...............hhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeee................eeeee.............hhhhhhhhhhhhh......eeee.....hhhhhhhhhhh..eeeeeeee..eeeeeeeeehhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pr8 A  11 DSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDLSLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPDGPAVYMVQTRQAFE 183
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   


Chain B from PDB  Type:PROTEIN  Length:173
 aligned with Q8GLI5_SALTM | Q8GLI5 from UniProtKB/TrEMBL  Length:189

    Alignment length:173
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180   
         Q8GLI5_SALTM    11 DSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDLSLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPDGPAVYMVQTRQAFE 183
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeeee................eeeee.............hhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhh..eeeeeeee..eeeeeeeeehhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pr8 B  11 DSVTLRLMTEHDLAMLYEWLNRSHIVEWWGGEEARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDLSLANASQLGKGLGTKLVRALVELLFNDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTTPDGPAVYMVQTRQAFE 183
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2PR8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2PR8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2PR8)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q8GLI5_SALTM | Q8GLI5)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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 Related Entries

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        Q8GLI5_SALTM | Q8GLI5: 2prb 2qir

(-) Related Entries Specified in the PDB File

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