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(-) Description

Title :  PHOTOSYNTHETIC REACTION CENTER AND CORE ANTENNA SYSTEM (TRIMERIC), ALPHA CARBON ONLY
 
Authors :  N. Krauss, W. -D. Schubert, O. Klukas, P. Fromme, H. T. Witt, W. Saenger
Date :  27 May 97  (Deposition) - 27 May 98  (Release) - 24 Mar 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.00
Chains :  Asym./Biol. Unit :  A,B,C,F,K,L
Keywords :  Photosynthetic Reaction Center, Oxygenic Photosynthesis, Core-Antenna Light-Harvesting System, Thermophilic Cyanobacterium, Helix-Bundle Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  N. Krauss, W. D. Schubert, O. Klukas, P. Fromme, H. T. Witt, W. Saenger
Photosystem I At 4 A Resolution Represents The First Structural Model Of A Joint Photosynthetic Reaction Centre And Core Antenna System.
Nat. Struct. Biol. V. 3 965 1996
PubMed-ID: 8901876  |  Reference-DOI: 10.1038/NSB1196-965
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOTOSYSTEM I
    Cellular LocationTHYLAKOID MEMBRANE
    ChainsA
    FragmentTHE PSI-PROTOMER IS A COMPLEX OF PSAA, PSAB, PSAC, PSAD, PSAE, PSAF, PSAI, PSAJ, PSAK, PSAL, PSAM
    Organism ScientificSYNECHOCOCCUS ELONGATUS
    Organism Taxid32046
    SynonymPSI, SYSTEM I OF OXYGENIC PHOTOSYNTHESIS
 
Molecule 2 - PHOTOSYSTEM I
    Cellular LocationTHYLAKOID MEMBRANE
    ChainsB
    FragmentTHE PSI-PROTOMER IS A COMPLEX OF PSAA, PSAB, PSAC, PSAD, PSAE, PSAF, PSAI, PSAJ, PSAK, PSAL, PSAM
    Organism ScientificSYNECHOCOCCUS ELONGATUS
    Organism Taxid32046
    SynonymPSI, SYSTEM I OF OXYGENIC PHOTOSYNTHESIS
 
Molecule 3 - PHOTOSYSTEM I
    Cellular LocationTHYLAKOID MEMBRANE
    ChainsL
    FragmentTHE PSI-PROTOMER IS A COMPLEX OF PSAA, PSAB, PSAC, PSAD, PSAE, PSAF, PSAI, PSAJ, PSAK, PSAL, PSAM
    Organism ScientificSYNECHOCOCCUS ELONGATUS
    Organism Taxid32046
    SynonymPSI, SYSTEM I OF OXYGENIC PHOTOSYNTHESIS
 
Molecule 4 - PHOTOSYSTEM I
    Cellular LocationTHYLAKOID MEMBRANE
    ChainsK
    FragmentTHE PSI-PROTOMER IS A COMPLEX OF PSAA, PSAB, PSAC, PSAD, PSAE, PSAF, PSAI, PSAJ, PSAK, PSAL, PSAM
    Organism ScientificSYNECHOCOCCUS ELONGATUS
    Organism Taxid32046
    SynonymPSI, SYSTEM I OF OXYGENIC PHOTOSYNTHESIS
 
Molecule 5 - PHOTOSYSTEM I
    Cellular LocationTHYLAKOID MEMBRANE
    ChainsF
    FragmentTHE PSI-PROTOMER IS A COMPLEX OF PSAA, PSAB, PSAC, PSAD, PSAE, PSAF, PSAI, PSAJ, PSAK, PSAL, PSAM
    Organism ScientificSYNECHOCOCCUS ELONGATUS
    Organism Taxid32046
    SynonymPSI, SYSTEM I OF OXYGENIC PHOTOSYNTHESIS
 
Molecule 6 - PHOTOSYSTEM I
    Cellular LocationTHYLAKOID MEMBRANE
    ChainsC
    FragmentTHE PSI-PROTOMER IS A COMPLEX OF PSAA, PSAB, PSAC, PSAD, PSAE, PSAF, PSAI, PSAJ, PSAK, PSAL, PSAM
    Organism ScientificSYNECHOCOCCUS ELONGATUS
    Organism Taxid32046
    SynonymPSI, SYSTEM I OF OXYGENIC PHOTOSYNTHESIS

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit ABCFKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 1459)

Asymmetric/Biological Unit (4, 1459)
No.NameCountTypeFull Name
1CLA89Ligand/IonCHLOROPHYLL A
2PQN1Ligand/IonPHYLLOQUINONE
3SF43Ligand/IonIRON/SULFUR CLUSTER
4UNK1366Mod. Amino Acid

(-) Sites  (42, 42)

Asymmetric Unit (42, 42)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECLA B:2002BINDING SITE FOR RESIDUE CLA A 2001
02AC2SOFTWARECLA A:2001BINDING SITE FOR RESIDUE CLA B 2002
03AC3SOFTWAREUNK B:428BINDING SITE FOR RESIDUE CLA B 2005
04AC4SOFTWAREUNK A:326 , UNK B:343 , UNK B:344BINDING SITE FOR RESIDUE SF4 B 2008
05AC5SOFTWAREUNK C:15 , UNK C:16BINDING SITE FOR RESIDUE SF4 C 2009
06AC6SOFTWAREUNK C:23 , UNK C:50 , UNK C:56BINDING SITE FOR RESIDUE SF4 C 2010
07AC7SOFTWARECLA F:3012BINDING SITE FOR RESIDUE CLA B 3001
08AC8SOFTWARECLA A:3007BINDING SITE FOR RESIDUE CLA F 3002
09AC9SOFTWARECLA B:3006BINDING SITE FOR RESIDUE CLA B 3003
10BC1SOFTWARECLA A:3014 , CLA A:3017BINDING SITE FOR RESIDUE CLA A 3005
11BC2SOFTWARECLA B:3003BINDING SITE FOR RESIDUE CLA B 3006
12BC3SOFTWARECLA F:3002BINDING SITE FOR RESIDUE CLA A 3007
13BC4SOFTWARECLA B:3034BINDING SITE FOR RESIDUE CLA B 3011
14BC5SOFTWARECLA B:3001 , UNK F:30 , UNK F:33BINDING SITE FOR RESIDUE CLA F 3012
15BC6SOFTWAREUNK A:264BINDING SITE FOR RESIDUE CLA A 3013
16BC7SOFTWARECLA A:3005 , CLA A:3029BINDING SITE FOR RESIDUE CLA A 3014
17BC8SOFTWAREUNK A:185 , UNK A:186 , UNK A:295 , CLA A:3029BINDING SITE FOR RESIDUE CLA A 3016
18BC9SOFTWARECLA A:3005BINDING SITE FOR RESIDUE CLA A 3017
19CC1SOFTWARECLA A:3024BINDING SITE FOR RESIDUE CLA A 3018
20CC2SOFTWAREUNK B:282 , UNK B:283BINDING SITE FOR RESIDUE CLA B 3020
21CC3SOFTWARECLA A:3043BINDING SITE FOR RESIDUE CLA F 3022
22CC4SOFTWARECLA A:3018 , CLA A:3027 , CLA A:3030BINDING SITE FOR RESIDUE CLA A 3024
23CC5SOFTWAREUNK A:163BINDING SITE FOR RESIDUE CLA A 3026
24CC6SOFTWAREUNK A:202 , UNK A:205 , CLA A:3024 , CLA A:3039 , CLA A:3052BINDING SITE FOR RESIDUE CLA A 3027
25CC7SOFTWAREUNK A:185 , CLA A:3014 , CLA A:3016BINDING SITE FOR RESIDUE CLA A 3029
26CC8SOFTWARECLA A:3024BINDING SITE FOR RESIDUE CLA A 3030
27CC9SOFTWAREUNK F:77 , UNK F:114BINDING SITE FOR RESIDUE CLA F 3031
28DC1SOFTWARECLA B:3011BINDING SITE FOR RESIDUE CLA B 3034
29DC2SOFTWARECLA A:3027BINDING SITE FOR RESIDUE CLA A 3039
30DC3SOFTWARECLA F:3022BINDING SITE FOR RESIDUE CLA A 3043
31DC4SOFTWAREUNK A:120BINDING SITE FOR RESIDUE CLA A 3045
32DC5SOFTWAREUNK K:61 , UNK K:62BINDING SITE FOR RESIDUE CLA K 3051
33DC6SOFTWARECLA A:3027BINDING SITE FOR RESIDUE CLA A 3052
34DC7SOFTWARECLA A:3057BINDING SITE FOR RESIDUE CLA A 3056
35DC8SOFTWARECLA A:3056BINDING SITE FOR RESIDUE CLA A 3057
36DC9SOFTWAREUNK B:47BINDING SITE FOR RESIDUE CLA B 3063
37EC1SOFTWAREUNK L:12BINDING SITE FOR RESIDUE CLA L 3064
38EC2SOFTWAREUNK A:58BINDING SITE FOR RESIDUE CLA A 3067
39EC3SOFTWAREUNK B:32BINDING SITE FOR RESIDUE CLA B 3069
40EC4SOFTWAREUNK A:44 , UNK A:45BINDING SITE FOR RESIDUE CLA A 3071
41EC5SOFTWAREUNK A:17BINDING SITE FOR RESIDUE CLA A 3079
42ETSUNKNOWNCLA A:2001 , CLA B:2002 , CLA B:2003 , CLA B:2004 , CLA B:2005 , CLA A:2006 , PQN B:2007 , SF4 B:2008 , SF4 C:2009 , SF4 C:2010THE COFACTORS CLA 2001 - 2006, PQN 2007 AND FS4 2008 - 2010 CONSTITUTE THE ELECTRON TRANSFER SYSTEM OF PHOTOSYSTEM I. A SECOND VIT K1, PSEUDO-SYMMETRICALLY POSITIONED TO PQN 2007, HAS NOT BEEN LOCATED.

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PPS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PPS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PPS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PPS)

(-) Exons   (0, 0)

(no "Exon" information available for 2PPS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:478
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh.....hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.................................................hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.............hhhhhhhhhh.hhhhhhh..hhhhhhhhhhhh.....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pps A   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 478
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Chain B from PDB  Type:PROTEIN  Length:503
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhh..........................hhhhhhhhhhhhhhhhhh....................hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhh....................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pps B   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 503
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Chain C from PDB  Type:PROTEIN  Length:80
                                                                                                                
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhh................................hhhh..................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 2pps C   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  80
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Chain F from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pps F   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 130
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Chain K from PDB  Type:PROTEIN  Length:64
                                                                                                
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                 2pps K   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  64
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Chain L from PDB  Type:PROTEIN  Length:111
                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 2pps L   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 111
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   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PSAA_THEEB | P0A4051c51 1jb0 3pcq 4fe1
        PSAB_THEEB | P0A4071c51 1jb0 3pcq 4fe1
        PSAC_THEEB | P0A4151c51 1jb0 3pcq 4fe1
        PSAD_THEEB | P0A4201c51 1jb0 3pcq 4fe1
        PSAE_THEEB | P0A4231c51 1jb0 3pcq 4fe1
        PSAF_THEEB | P0A4011c51 1jb0 3pcq 4fe1
        PSAI_THEEB | P0A4271jb0 3pcq 4fe1
        PSAJ_THEEB | P0A4291jb0 3pcq 4fe1
        PSAK_THEEB | P0A4251c51 1jb0 3pcq 4fe1
        PSAM_THEEB | P0A4031jb0 3pcq 4fe1

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2PPS)