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Title :   CRYSTAL STRUCTURE OF PUTATIVE BETA-PHOSPHOGLUCOMUTASE FROM THERMOTOGA MARITIMA

Authors :   R. W. Strange, S. V. Antonyuk, M. J. Ellis, Y. Bessho, S. Kuramitsu, S. Yo S. S. Hasnain, Riken Structural Genomics/Proteomics Initiative

Date :   20 Oct 09 (Deposition) - 17 Nov 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.74

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Arbohydrate Metabolism, Thermotoga Maritima, Cobalt, Magnesium, Manganese, Metal-Binding, Nickel, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. W. Strange, S. V. Antonyuk, M. J. Ellis, Y. Bessho, S. Kuramitsu, A. Shinkai, S. Yokoyama, S. S. Hasnain
Structure Of A Putative Beta-Phosphoglucomutase (Tm1254) From Thermotoga Maritima.
Acta Crystallogr. , Sect. F V. 65 1218 2009
PubMed-ID: 20054115 | Reference-DOI: 10.1107/S1744309109046302

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 14)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:190 , GLY A:191 , LYS A:192 , ALA A:193 , HOH A:357	BINDING SITE FOR RESIDUE SO4 A 224
2	AC2	SOFTWARE	PRO A:46 , GLU A:47 , HOH A:391	BINDING SITE FOR RESIDUE SO4 A 225
3	AC3	SOFTWARE	ASP A:7 , MSE A:8 , ASP A:9 , THR A:107 , SER A:108 , THR A:109 , LYS A:140 , HOH A:311 , HOH A:329	BINDING SITE FOR RESIDUE SO4 A 226
4	AC4	SOFTWARE	SER A:166 , LYS A:167 , SER A:168 , HOH A:238 , HOH A:255	BINDING SITE FOR RESIDUE SO4 A 227
5	AC5	SOFTWARE	ASP A:128 , VAL A:129 , MSE A:130 , PHE A:132 , ASN A:189 , HOH A:295 , HOH A:441	BINDING SITE FOR RESIDUE GOL A 218
6	AC6	SOFTWARE	MSE A:1 , GLU A:158 , LYS A:159 , HOH A:408	BINDING SITE FOR RESIDUE GOL A 220
7	AC7	SOFTWARE	LEU A:188 , LEU A:202 , LYS A:204 , GLU A:207 , HOH A:248 , HOH A:335 , HOH A:346 , HOH A:360	BINDING SITE FOR RESIDUE GOL A 221
8	AC8	SOFTWARE	HIS A:72 , LYS A:76 , ARG A:112 , ARG A:180	BINDING SITE FOR RESIDUE GOL A 222

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:216
 aligned with P1254_THEMA | Q9X0Y1 from UniProtKB/Swiss-Prot  Length:216

    Alignment length:216
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210      
          P1254_THEMA     1 MEAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVALVKPEEILNVLKEVL 216
               SCOP domains d3kbba_ A: automated matches                                                                                                                                                                                             SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ---HAD_2-3kbbA01 A:4-182                                                                                                                                                              ---------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..eeeee...hhhhhhhhhhhh.hhhhh.eeehhhhh......hhhhhhhhhhhh.hhh.eeeee.hhhhhhhhhhh....eeee......hhhhhhh...eeehhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kbb A   1 mEAVIFDmDGVLmDTEPLYFEAYRRVAESYGKPYTEDLHRRImGVPEREGLPILmEALEIKDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLEKYFDVmVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVALVKPEEILNVLKEVL 216
                            |      |10  |     20        30        40  |     50    |   60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210      
                            |      8-MSE|                            43-MSE      55-MSE                                                                    130-MSE                                                                                  
                            1-MSE      13-MSE

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (P1254_THEMA | Q9X0Y1)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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