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(-) Description

Title :  CRYSTAL STRUCTURE OF PH0832 FROM PYROCOCCUS HORIKOSHII OT3
 
Authors :  M. Sugahara, N. Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  26 Mar 07  (Deposition) - 02 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Pyrococcus Horikoshii Ot3, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sugahara, N. Kunishima
Crystal Structure Of Ph0832 From Pyrococcus Horikoshii Ot3
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN PH0832
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-11A
    Expression System Strain: BL21-CODONPLUS(DE3)-RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 11-109
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 70601
    Strain: OT3

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): ABCD
Biological Unit 2 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2ZN4Ligand/IonZINC ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:2 , ARG A:5 , ASP A:6 , ZN A:2001 , HOH A:2086 , ILE C:13 , GLU C:24 , GLU C:28BINDING SITE FOR RESIDUE ACT A 1001
2AC2SOFTWAREILE A:13 , GLU A:24 , GLU A:28 , HOH A:2087 , SER C:2 , ARG C:5 , ZN C:2002BINDING SITE FOR RESIDUE ACT C 1002
3AC3SOFTWARESER A:2 , ACT A:1001 , GLU C:24 , GLU C:28BINDING SITE FOR RESIDUE ZN A 2001
4AC4SOFTWAREGLU A:24 , GLU A:28 , SER C:2 , ACT C:1002BINDING SITE FOR RESIDUE ZN C 2002
5AC5SOFTWAREGLU C:82 , GLU D:24 , GLU D:28BINDING SITE FOR RESIDUE ZN D 2003
6AC6SOFTWAREGLU C:18 , LYS C:72 , HOH C:2066 , GLU D:82BINDING SITE FOR RESIDUE ZN C 2004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P9X)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P9X)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P9X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P9X)

(-) Exons   (0, 0)

(no "Exon" information available for 2P9X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:98
 aligned with O58562_PYRHO | O58562 from UniProtKB/TrEMBL  Length:109

    Alignment length:98
                                    21        31        41        51        61        71        81        91       101        
         O58562_PYRHO    12 SKGRDILTKTIILALREVAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKIYGE 109
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2p9x A   2 SKGRDILTKTIILALREVAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKIYGE  99
                                    11        21        31        41        51        61        71        81        91        


Chain B from PDB  Type:PROTEIN  Length:95
 aligned with O58562_PYRHO | O58562 from UniProtKB/TrEMBL  Length:109

    Alignment length:97
                                    22        32        42        52        62        72        82        92       102       
         O58562_PYRHO    13 KGRDILTKTIILALREVAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKIYGE 109
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--....hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 2p9x B   3 KGRDILTKTIILALREVAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLEMVIISKLKGRLG--IEANSLEELVSEIRKIYGE  99
                                    12        22        32        42        52        62        72     |  82        92       
                                                                                                      78 81                  


Chain C from PDB  Type:PROTEIN  Length:98
 aligned with O58562_PYRHO | O58562 from UniProtKB/TrEMBL  Length:109

    Alignment length:98
                                    21        31        41        51        61        71        81        91       101        
         O58562_PYRHO    12 SKGRDILTKTIILALREVAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKIYGE 109
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2p9x C   2 SKGRDILTKTIILALREVAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKIYGE  99
                                    11        21        31        41        51        61        71        81        91        


Chain D from PDB  Type:PROTEIN  Length:98
 aligned with O58562_PYRHO | O58562 from UniProtKB/TrEMBL  Length:109

    Alignment length:98
                                    21        31        41        51        61        71        81        91       101        
         O58562_PYRHO    12 SKGRDILTKTIILALREVAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKIYGE 109
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) DUF3227-2p9xD01 D:2-99                                                                             Pfam domains (1)
           Pfam domains (2) DUF3227-2p9xD02 D:2-99                                                                             Pfam domains (2)
           Pfam domains (3) DUF3227-2p9xD03 D:2-99                                                                             Pfam domains (3)
           Pfam domains (4) DUF3227-2p9xD04 D:2-99                                                                             Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 2p9x D   2 SKGRDILTKTIILALREVAPGLEAVLEAHLRATLNSGIELAYDDPQKFKEAVSKLFGEYSARLLEMVIISKLKGRLGEDIEANSLEELVSEIRKIYGE  99
                                    11        21        31        41        51        61        71        81        91
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2P9X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P9X)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF3227] (1)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (O58562_PYRHO | O58562)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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