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(-) Description

Title :  CRYSTAL STRUCTURES OF SACCHAROMYCES CEREVISIAE N-MYRISTOYLTRANSFERASE WITH BOUND MYRISTOYL-COA AND INHIBITORS
 
Authors :  J. Wu, J. Ding
Date :  18 Mar 07  (Deposition) - 12 Jun 07  (Release) - 09 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.10
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Antifungal Drug, Non-Peptidic Inhibitor, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Wu, Y. Tao, M. Zhang, M. H. Howard, S. Gutteridge, J. Ding
Crystal Structures Of Saccharomyces Cerevisiae N-Myristoyltransferase With Bound Myristoyl-Coa And Inhibitors Reveal The Functional Roles Of The N-Terminal Region.
J. Biol. Chem. V. 282 22185 2007
PubMed-ID: 17513302  |  Reference-DOI: 10.1074/JBC.M702696200

(-) Compounds

Molecule 1 - GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE
    Chains: A, B, C, D, E, F
    EC Number: 2.3.1.97
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PBX3
    Expression System Strain: BL21(DE3) PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 850892
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1GN86Ligand/Ion(Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE
2MYA6Ligand/IonTETRADECANOYL-COA
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1GN81Ligand/Ion(Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE
2MYA1Ligand/IonTETRADECANOYL-COA
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1GN81Ligand/Ion(Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE
2MYA1Ligand/IonTETRADECANOYL-COA
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1GN81Ligand/Ion(Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE
2MYA1Ligand/IonTETRADECANOYL-COA
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1GN81Ligand/Ion(Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE
2MYA1Ligand/IonTETRADECANOYL-COA
Biological Unit 5 (2, 2)
No.NameCountTypeFull Name
1GN81Ligand/Ion(Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE
2MYA1Ligand/IonTETRADECANOYL-COA
Biological Unit 6 (2, 2)
No.NameCountTypeFull Name
1GN81Ligand/Ion(Z)-3-BENZYL-5-(2-HYDROXY-3-NITROBENZYLIDENE)-2-THIOXOTHIAZOLIDIN-4-ONE
2MYA1Ligand/IonTETRADECANOYL-COA

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:38 , LYS A:39 , PHE A:40 , TRP A:41 , TYR A:103 , ILE A:168 , ASN A:169 , PHE A:170 , LEU A:171 , CYS A:172 , VAL A:173 , ARG A:178 , SER A:179 , LYS A:180 , ARG A:181 , LEU A:182 , THR A:183 , PRO A:184 , ILE A:187 , THR A:191 , ASN A:195 , ALA A:202 , TYR A:204 , THR A:205 , ILE A:208 , LEU A:210 , PHE A:425BINDING SITE FOR RESIDUE MYA A 601
02AC2SOFTWAREHIS B:38 , LYS B:39 , PHE B:40 , TRP B:41 , TYR B:103 , ILE B:168 , ASN B:169 , PHE B:170 , LEU B:171 , CYS B:172 , VAL B:173 , ARG B:178 , SER B:179 , LYS B:180 , ARG B:181 , LEU B:182 , THR B:183 , ILE B:187 , THR B:191 , ASN B:195 , TRP B:200 , HIS B:201 , ALA B:202 , TYR B:204 , THR B:205 , ILE B:208 , LEU B:210 , PHE B:425BINDING SITE FOR RESIDUE MYA B 602
03AC3SOFTWAREHIS C:38 , LYS C:39 , PHE C:40 , TRP C:41 , TYR C:103 , ILE C:168 , ASN C:169 , PHE C:170 , LEU C:171 , VAL C:173 , ARG C:178 , SER C:179 , ARG C:181 , LEU C:182 , THR C:183 , PRO C:184 , ILE C:187 , THR C:191 , VAL C:194 , ASN C:195 , HIS C:201 , ALA C:202 , TYR C:204 , THR C:205 , ILE C:208 , LEU C:210 , PHE C:425BINDING SITE FOR RESIDUE MYA C 603
04AC4SOFTWAREHIS D:38 , LYS D:39 , PHE D:40 , TRP D:41 , ILE D:168 , PHE D:170 , LEU D:171 , CYS D:172 , VAL D:173 , ARG D:178 , SER D:179 , LYS D:180 , ARG D:181 , LEU D:182 , THR D:183 , PRO D:184 , ILE D:187 , THR D:191 , ASN D:195 , TRP D:200 , HIS D:201 , TYR D:204 , THR D:205 , LEU D:210 , PHE D:425BINDING SITE FOR RESIDUE MYA D 604
05AC5SOFTWAREHIS E:38 , LYS E:39 , PHE E:40 , TRP E:41 , TYR E:103 , ILE E:168 , ASN E:169 , PHE E:170 , LEU E:171 , CYS E:172 , VAL E:173 , ARG E:178 , SER E:179 , LYS E:180 , ARG E:181 , LEU E:182 , THR E:183 , ILE E:187 , THR E:191 , HIS E:201 , TYR E:204 , THR E:205 , ILE E:208 , LEU E:210 , PHE E:425BINDING SITE FOR RESIDUE MYA E 605
06AC6SOFTWAREHIS F:38 , LYS F:39 , PHE F:40 , TRP F:41 , TYR F:103 , ILE F:168 , ASN F:169 , PHE F:170 , LEU F:171 , CYS F:172 , VAL F:173 , ARG F:178 , SER F:179 , LYS F:180 , ARG F:181 , LEU F:182 , THR F:183 , PRO F:184 , ILE F:187 , THR F:191 , VAL F:194 , HIS F:201 , TYR F:204 , THR F:205 , ILE F:208 , LEU F:210 , PHE F:425BINDING SITE FOR RESIDUE MYA F 606
07AC7SOFTWAREPHE A:111 , GLY A:207 , ASP A:233 , PHE A:234BINDING SITE FOR RESIDUE GN8 A 701
08AC8SOFTWAREPHE B:111 , TYR B:219 , ASP B:233 , PHE B:234BINDING SITE FOR RESIDUE GN8 B 702
09AC9SOFTWAREPHE C:111 , GLY C:207 , TYR C:219 , ASP C:233 , PHE C:234BINDING SITE FOR RESIDUE GN8 C 703
10BC1SOFTWAREPHE D:111 , PHE D:234 , PHE D:334 , LEU D:455BINDING SITE FOR RESIDUE GN8 D 704
11BC2SOFTWAREPHE E:111 , PHE E:113BINDING SITE FOR RESIDUE GN8 E 705
12BC3SOFTWAREPHE F:111 , GLY F:207 , TYR F:219 , ASP F:233 , PHE F:234 , PHE F:334BINDING SITE FOR RESIDUE GN8 F 706

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P6F)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2P6F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P6F)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT_YEAST167-175
 
 
 
 
 		  6A:167-175
B:167-175
C:167-175
D:167-175
E:167-175
F:167-175
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT_YEAST412-418
 
 
 
 
 		  6A:412-418
B:412-418
C:412-418
D:412-418
E:412-418
F:412-418
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT_YEAST167-175
 
 
 
 
 		  1A:167-175
-
-
-
-
-
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT_YEAST412-418
 
 
 
 
 		  1A:412-418
-
-
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT_YEAST167-175
 
 
 
 
 		  1-
B:167-175
-
-
-
-
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT_YEAST412-418
 
 
 
 
 		  1-
B:412-418
-
-
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT_YEAST167-175
 
 
 
 
 		  1-
-
C:167-175
-
-
-
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT_YEAST412-418
 
 
 
 
 		  1-
-
C:412-418
-
-
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT_YEAST167-175
 
 
 
 
 		  1-
-
-
D:167-175
-
-
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT_YEAST412-418
 
 
 
 
 		  1-
-
-
D:412-418
-
-
Biological Unit 5 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT_YEAST167-175
 
 
 
 
 		  1-
-
-
-
E:167-175
-
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT_YEAST412-418
 
 
 
 
 		  1-
-
-
-
E:412-418
-
Biological Unit 6 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NMT_1PS00975 Myristoyl-CoA:protein N-myristoyltransferase signature 1.NMT_YEAST167-175
 
 
 
 
 		  1-
-
-
-
-
F:167-175
2NMT_2PS00976 Myristoyl-CoA:protein N-myristoyltransferase signature 2.NMT_YEAST412-418
 
 
 
 
 		  1-
-
-
-
-
F:412-418

(-) Exons   (1, 6)

Asymmetric Unit (1, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YLR195C1YLR195C.1XII:543306-5419391368NMT_YEAST1-4554556A:5-455 (gaps)
B:5-455 (gaps)
C:5-455 (gaps)
D:5-455 (gaps)
E:5-455 (gaps)
F:5-455 (gaps)		451
451
451
451
451
451

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:436
 aligned with NMT_YEAST | P14743 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:451
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
            NMT_YEAST     5 DKAKKLENLLKLLQLNNDDTSKFTQEQKKAMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh...---------------...hhhhh...................hhhhh..........eeeee....hhhhhhhhhhhhhhhh.......eee..hhhhhhhhh.....hhh.eeeeee.....eeeeeeeeeeee.hhhh.eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeee......eeeeeeeeeee.hhhhhhhh.........hhhhhhhhh..........eee.hhhhhhhhhhhhhhhhh.....ee.hhhhhhhhhh...........eeeeeee.....eeeeeeeee..eee.......ee.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhh......eeeeeeeeeeee.............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_1    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:5-455 (gaps) UniProt: 1-455 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                           Transcript 1
                 2p6f A   5 DKAKKLENLLKLLQLNN---------------DHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
                                    14      |  -         -  |     44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
                                           21              37                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:436
 aligned with NMT_YEAST | P14743 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:451
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
            NMT_YEAST     5 DKAKKLENLLKLLQLNNDDTSKFTQEQKKAMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh..---------------...hhhhh...................hhhhh..........eeeee....hhhhhhhhhhhhhhhh.......eee..hhhhhhhhh.....hhh.eeeeee....eeeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeee........eeeeeeeee.hhhhhhhh.........hhhhhhhhh..........eee....hhhhhhhhhhhhhh...eee..hhhhhhhhhh.....hhhhh.eeeeeee.....eeeeeeeee..eee.......ee.eeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhh....eeee.....hhhhhhhhh.eeeeeeeeeeee.............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_1    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: B:5-455 (gaps) UniProt: 1-455 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                           Transcript 1
                 2p6f B   5 DKAKKLENLLKLLQLNN---------------DHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
                                    14      |  -         -  |     44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
                                           21              37                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:436
 aligned with NMT_YEAST | P14743 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:451
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
            NMT_YEAST     5 DKAKKLENLLKLLQLNNDDTSKFTQEQKKAMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh...---------------...hhhhh..................................eeeee......hhhhhhhhhhhh.........eee..hhhhhhhhh.....hhh.eeeeee.......eeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeee........eeeeeeeee.hhhhhhhh.........hhhhhhhhh..........eee....hhhhhhhhhhhhhh...eee....hhhhhhhh.....hhhhh.eeeeeee.....eeeeeeeee..eee.......ee.eeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee.....hhhhhh....eeeeeeeeeeee.............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_1    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: C:5-455 (gaps) UniProt: 1-455 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                           Transcript 1
                 2p6f C   5 DKAKKLENLLKLLQLNN---------------DHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
                                    14      |  -         -  |     44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
                                           21              37                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:436
 aligned with NMT_YEAST | P14743 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:451
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
            NMT_YEAST     5 DKAKKLENLLKLLQLNNDDTSKFTQEQKKAMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..---------------...hhhhh..................................eee......hhhhhhhhhhhhhhhh.......eee..hhhhhhhhh.....hhhhh..eee.....eeeeeeeeeeeehhhhh.eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeee......eeeeee.eeee.hhhhhhhh.........hhhhhhhhh..........eee....hhhhhhhhhhhhhhhh......hhhhhhhhhh...........eeeeeee.....eeeeeeeee..eee.......ee.eeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee.....hhhhhh.........eeeeeee.............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_1    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: D:5-455 (gaps) UniProt: 1-455 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                           Transcript 1
                 2p6f D   5 DKAKKLENLLKLLQLNN---------------DHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
                                    14      |  -         -  |     44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
                                           21              37                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:436
 aligned with NMT_YEAST | P14743 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:451
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
            NMT_YEAST     5 DKAKKLENLLKLLQLNNDDTSKFTQEQKKAMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh.....---------------...hhhhh...................hhhhh..........eeeee....hhhhhhhhhhhhhhhh..hhhh.eee..hhhhhhhhh.....hhh.eeeeee.....eeeeeeeeeeeeee..eeeeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhh....eeeeee........eeee.eeee.hhhhhhh..........hhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhhh.eeee.hhhhhhhhhh...........eeeeeee.....eeeeeeeee..eee.......ee.eeee...ee.hhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee....hhhhh...........eeeeeee.............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_1    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: E:5-455 (gaps) UniProt: 1-455 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                           Transcript 1
                 2p6f E   5 DKAKKLENLLKLLQLNN---------------DHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
                                    14      |  -         -  |     44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
                                           21              37                                                                                                                                                                                                                                                                                                                                                                                                                                  


Chain F from PDB  Type:PROTEIN  Length:435
 aligned with NMT_YEAST | P14743 from UniProtKB/Swiss-Prot  Length:455

    Alignment length:451
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
            NMT_YEAST     5 DKAKKLENLLKLLQLNNDDTSKFTQEQKKAMKDHKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------NMT-2p6fF01 F:56-217                                                                                                                                              -------------NMT_C-2p6fF07 F:231-454                                                                                                                                                                                                         - Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------NMT-2p6fF02 F:56-217                                                                                                                                              -------------NMT_C-2p6fF08 F:231-454                                                                                                                                                                                                         - Pfam domains (2)
           Pfam domains (3) ---------------------------------------------------NMT-2p6fF03 F:56-217                                                                                                                                              -------------NMT_C-2p6fF09 F:231-454                                                                                                                                                                                                         - Pfam domains (3)
           Pfam domains (4) ---------------------------------------------------NMT-2p6fF04 F:56-217                                                                                                                                              -------------NMT_C-2p6fF10 F:231-454                                                                                                                                                                                                         - Pfam domains (4)
           Pfam domains (5) ---------------------------------------------------NMT-2p6fF05 F:56-217                                                                                                                                              -------------NMT_C-2p6fF11 F:231-454                                                                                                                                                                                                         - Pfam domains (5)
           Pfam domains (6) ---------------------------------------------------NMT-2p6fF06 F:56-217                                                                                                                                              -------------NMT_C-2p6fF12 F:231-454                                                                                                                                                                                                         - Pfam domains (6)
         Sec.struct. author hhhhhhhhhhhhhh...----------------.........................................ee.......hhhhhhhhhhhhhhhh.......eee..hhhhhhhhh.....hhh.eeeeee.....eeeeeeeeeeeeee..eeeeeeeeeeeee.........hhhhhhhhhhhhhh.....eeeee......eeeeeeeeeee.hhhhhhhh.........hhhhhhhhhh.........ee.....hhhhhhhhhhhhhh...eeee....hhhhhh............eeeeeee.....eeeeeeeee..eee.......ee.eeeeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhh.eeeeeeeeeeee.............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_1    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMT_2  ------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: F:5-455 (gaps) UniProt: 1-455 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                           Transcript 1
                 2p6f F   5 DKAKKLENLLKLLQLNN----------------HKFWRTQPVKDFDEKVVEEGPIDKPKTPEDISDKPLPLLSSFEWCSIDVDNKKQLEDVFVLLNENYVEDRDAGFRFNYTKEFFNWALKSPGWKKDWHIGVRVKETQKLVAFISAIPVTLGVRGKQVPSVEINFLCVHKQLRSKRLTPVLIKEITRRVNKCDIWHALYTAGIVLPAPVSTCRYTHRPLNWKKLYEVDFTGLPDGHTEEDMIAENALPAKTKTAGLRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQPDGKITDFFSFYSLPFTILNNTKYKDLGIGYLYYYATDADFQFKDRFDPKATKALKTRLCELIYDACILAKNANMDVFNALTSQDNTLFLDDLKFGPGDGFLNFYLFNYRAKPITGGLNPDNSNDIKRRSNVGVVML 455
                                    14      |  -         -   |    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454 
                                           21               38
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2P6F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P6F)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: Acetyltrans (109)
(-)
Clan: no clan defined [family: NMT_C] (9)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (NMT_YEAST | P14743)
molecular function
    GO:0004379    glycylpeptide N-tetradecanoyltransferase activity    Catalysis of the reaction: tetradecanoyl-CoA + glycyl-peptide = CoA + N-tetradecanoylglycyl-peptide.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016746    transferase activity, transferring acyl groups    Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
    GO:0018008    N-terminal peptidyl-glycine N-myristoylation    The myristoylation of the N-terminal glycine of proteins to form the derivative N-myristoyl-glycine.
    GO:0006499    N-terminal protein myristoylation    The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein.
    GO:0001302    replicative cell aging    The process associated with progression of the cell from its inception to the end of its lifespan that occurs as the cell continues cycles of growth and division.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  NMT_YEAST | P14743
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  2.3.1.97
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NMT_YEAST | P14743: 1iic 1iid 2nmt 2p6e 2p6g

(-) Related Entries Specified in the PDB File

2p6e 2p6g