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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL 10 KDA SUBDOMAIN FROM C. ELEGANS HSP70
 
Authors :  L. J. Worrall, M. D. Walkinshaw
Date :  08 Mar 07  (Deposition) - 17 Apr 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  A,B,C,D,E,F  (1x)
Keywords :  Three-Helix Bundle, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. J. Worrall, M. D. Walkinshaw
Crystal Structure Of The C-Terminal Three-Helix Bundle Subdomain Of C. Elegans Hsp70.
Biochem. Biophys. Res. Commun. V. 357 105 2007
PubMed-ID: 17407764  |  Reference-DOI: 10.1016/J.BBRC.2007.03.107

(-) Compounds

Molecule 1 - HEAT SHOCK 70 KDA PROTEIN A
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A
    Expression System Strain: ROSETTA2(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL 10 KDA SUBDOMAIN
    Gene: HSP-1, HSP70A
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F
Biological Unit 7 (1x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 7 (1, 6)
No.NameCountTypeFull Name
1SO46Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:537 , LYS C:580BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWARELYS B:580 , ARG C:537BINDING SITE FOR RESIDUE SO4 C 2
3AC3SOFTWARELYS D:580 , ARG E:537BINDING SITE FOR RESIDUE SO4 E 3
4AC4SOFTWAREARG D:537 , LYS F:580BINDING SITE FOR RESIDUE SO4 D 4
5AC5SOFTWARELYS E:580 , ARG F:537BINDING SITE FOR RESIDUE SO4 F 5
6AC6SOFTWARELYS A:580 , ARG B:537BINDING SITE FOR RESIDUE SO4 B 6

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2P32)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gly A:533 -Leu A:534
2Gly B:533 -Leu B:534
3Gly C:533 -Leu C:534
4Gly D:533 -Leu D:534
5Gly E:533 -Leu E:534
6Gly F:533 -Leu F:534

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2P32)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2P32)

(-) Exons   (0, 0)

(no "Exon" information available for 2P32)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:82
 aligned with HSP7A_CAEEL | P09446 from UniProtKB/Swiss-Prot  Length:640

    Alignment length:151
                                   473       483       493       503       513       523       533       543       553       563       573       583       593       603       613 
          HSP7A_CAEEL   464 GIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--.hh-------------------------------------------------------------------hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p32 A 533 GL--VPR-------------------------------------------------------------------GSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
                             |  | |  -         -         -         -         -         -         -    |  543       553       563       573       583       593       603       613 
                             |  | |                                                                 538                                                                            
                           534  | |                                                                                                                                                
                              535 |                                                                                                                                                
                                537                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:82
 aligned with HSP7A_CAEEL | P09446 from UniProtKB/Swiss-Prot  Length:640

    Alignment length:151
                                   473       483       493       503       513       523       533       543       553       563       573       583       593       603       613 
          HSP7A_CAEEL   464 GIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--.hh-------------------------------------------------------------------hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p32 B 533 GL--VPR-------------------------------------------------------------------GSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
                             |  | |  -         -         -         -         -         -         -    |  543       553       563       573       583       593       603       613 
                           534  | |                                                                 538                                                                            
                              535 |                                                                                                                                                
                                537                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:82
 aligned with HSP7A_CAEEL | P09446 from UniProtKB/Swiss-Prot  Length:640

    Alignment length:151
                                   473       483       493       503       513       523       533       543       553       563       573       583       593       603       613 
          HSP7A_CAEEL   464 GIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--.hh-------------------------------------------------------------------hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p32 C 533 GL--VPR-------------------------------------------------------------------GSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
                             |  | |  -         -         -         -         -         -         -    |  543       553       563       573       583       593       603       613 
                           534  | |                                                                 538                                                                            
                              535 |                                                                                                                                                
                                537                                                                                                                                                


Chain D from PDB  Type:PROTEIN  Length:82
 aligned with HSP7A_CAEEL | P09446 from UniProtKB/Swiss-Prot  Length:640

    Alignment length:151
                                   473       483       493       503       513       523       533       543       553       563       573       583       593       603       613 
          HSP7A_CAEEL   464 GIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--.hh-------------------------------------------------------------------hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p32 D 533 GL--VPR-------------------------------------------------------------------GSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
                             |  | |  -         -         -         -         -         -         -    |  543       553       563       573       583       593       603       613 
                           534  | |                                                                 538                                                                            
                              535 |                                                                                                                                                
                                537                                                                                                                                                


Chain E from PDB  Type:PROTEIN  Length:82
 aligned with HSP7A_CAEEL | P09446 from UniProtKB/Swiss-Prot  Length:640

    Alignment length:151
                                   473       483       493       503       513       523       533       543       553       563       573       583       593       603       613 
          HSP7A_CAEEL   464 GIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..--.hh-------------------------------------------------------------------hhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p32 E 533 GL--VPR-------------------------------------------------------------------GSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
                             |  | |  -         -         -         -         -         -         -    |  543       553       563       573       583       593       603       613 
                           534  | |                                                                 538                                                                            
                              535 |                                                                                                                                                
                                537                                                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:82
 aligned with HSP7A_CAEEL | P09446 from UniProtKB/Swiss-Prot  Length:640

    Alignment length:151
                                   473       483       493       503       513       523       533       543       553       563       573       583       593       603       613 
          HSP7A_CAEEL   464 GIPPAPRGVPQIEVTFDIDANGILNVSATDKSTGKQNKITITNDKGRLSKDDIERMVNEAEKYKADDEAQKDRIGAKNGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------HSP70-2p32F01 F:542-613                                                 - Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------HSP70-2p32F02 F:542-613                                                 - Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------HSP70-2p32F03 F:542-613                                                 - Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------HSP70-2p32F04 F:542-613                                                 - Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------HSP70-2p32F05 F:542-613                                                 - Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------HSP70-2p32F06 F:542-613                                                 - Pfam domains (6)
         Sec.struct. author ..--.hh-------------------------------------------------------------------hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p32 F 533 GL--VPR-------------------------------------------------------------------GSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLYQS 614
                             |  | |  -         -         -         -         -         -         -    |  543       553       563       573       583       593       603       613 
                           534  | |                                                                 538                                                                            
                              535 |                                                                                                                                                
                                537
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2P32)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2P32)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: Actin_ATPase (173)
(-)
Family: HSP70 (41)
(-)
Caenorhabditis elegans (2)
1aHSP70-2p32F01F:542-613
1bHSP70-2p32F02F:542-613
1cHSP70-2p32F03F:542-613
1dHSP70-2p32F04F:542-613
1eHSP70-2p32F05F:542-613
1fHSP70-2p32F06F:542-613

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (HSP7A_CAEEL | P09446)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0008340    determination of adult lifespan    The control of viability and duration in the adult phase of the life-cycle.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0042147    retrograde transport, endosome to Golgi    The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  2p32
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  HSP7A_CAEEL | P09446
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HSP7A_CAEEL | P09446: 4i2w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2P32)